Jatropha Genome Database

JcCA0080751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0080751.10 + phase: 2 /pseudo/partial
         (1420 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07701                                                            492   e-138

>KJC_c07701 
          Length = 667

 Score =  492 bits (248), Expect = e-138
 Identities = 319/347 (91%), Gaps = 21/347 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctaacttccgatcagcttcatctccatcaccagcnnnnnnnctccgatttcgaagtc 60
           |||||||||||||||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 327 attctaacttccgatcagcttcatctccatcaccagctttttttctccgatttcgaagtc 268

                                                                       
Query: 61  gagttttttgcggcacagattcttaagcgaaagacgttgtttcacaatgcagatccagag 120
           ||||||||||||||||||||||||||||||||||                   |||||||
Sbjct: 267 gagttttttgcggcacagattcttaagcgaaaga-------------------tccagag 227

                                                                       
Query: 121 tgaaggatattatttgcagttaggagtcaaagatgctttattaaatgctcttcttgtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgaaggatattatttgcagttaggagtcaaagatgctttattaaatgctcttcttgtggc 167

                                                                       
Query: 181 tgccaaaagatttagttcaggccctccccagcttttgactcaaatttgtcttgcacttgc 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 166 tgccaaaagatttagttcaggccct-cccagcttttgactcaaatttgtcttgcacttgc 108

                                                                       
Query: 241 tgcccttatactacgtgctgctgagcatggaaaacctattgagcagcttttttacag-cc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 107 tgcccttatactacgtgctgctgagcatggaaaacctattgagcagcttttttacagtcc 48

                                                          
Query: 300 ttcggactctgcagaaccaggatgatagtaatatggctgttctggag 346
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ttcggactctgcagaaccaggatgatagtaatatggctgttctggag 1