Jatropha Genome Database

JcCA0080721.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0080721.40 - phase: 2 /pseudo/partial
         (529 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09397                                                             62   1e-09

>KJC_c09397 
          Length = 389

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 136/171 (79%)
 Strand = Plus / Plus

                                                                       
Query: 263 acagatggagatgctgttctgttcaagcgtagtgggtttgcctttcttgatccctcccat 322
           |||||| ||| |||||||||| ||||  ||||| || |||||||| ||| | || || ||
Sbjct: 74  acagattgaggtgctgttctgctcaacagtagtaggattgcctttattgcttccaccaat 133

                                                                       
Query: 323 gcttttgacaggagagttattcaaagcttggaactcatgttatcagcatccatacgtata 382
           | | |||||||||||| | ||||| |||||||  || ||||  || |||||||| || ||
Sbjct: 134 gatcttgacaggagagctgttcaaggcttggagttcttgttcacaacatccatatgtgta 193

                                                              
Query: 383 tggggtgttggtgtttgaagccatggccacgtttattggtcaagtctctgt 433
            |||||| | || |||||||| ||||| || || ||||| ||||| |||||
Sbjct: 194 cggggtgctagtatttgaagctatggcgacattcattgggcaagtatctgt 244