Jatropha Genome Database
- JcCA0080621.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0080621.20 - phase: 0 /pseudo
(1563 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c12118 86 3e-16
KJC_c03168 80 2e-14
KJC_c03906 76 3e-13
KJC_c06446 62 4e-09
KJC_c02448 60 2e-08
KJC_c04805 58 7e-08
KJC_c05392 56 3e-07
>KJC_c12118
Length = 661
Score = 85.7 bits (43), Expect = 3e-16
Identities = 101/119 (84%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 482 gaaaacatggtga-aaagaaatggaaatgtgacaaatgctccaaaaaatatgcagtgcaa 540
||||||||||||| ||| |||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 124 gaaaacatggtgagaaaaaaatggaagtgtgagaaatgttcaaagagatatgctgtgcaa 65
Query: 541 tctgattggaaagctcatcaaaagacttgtggtacaagagaatataaatgcgattgtgg 599
|||||||||||||| ||| ||||||||||| || |||||||||| ||| || |||||
Sbjct: 64 tctgattggaaagcccattctaagacttgtggcaccagagaatatagatgtgactgtgg 6
Score = 67.9 bits (34), Expect = 7e-11
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 253 acacttatggcaacaaatcggtttgtgtgtgagatatgcaacaaagggtttcagagggac 312
||||| ||||||||||| |||| | |||||| |||||||||||||||| ||||||||
Sbjct: 353 acactaatggcaacaaacaggttcatatgtgaggtatgcaacaaagggttccagagggag 294
Query: 313 caaaacctgcaattgcataggagaggtcataaccttccatggaagctcaggcagagaact 372
|||||||| || | || || ||||| || ||||| || |||||||| | ||||| ||||
Sbjct: 293 caaaacctacagctccacagaagaggacacaacctaccttggaagctaaagcagaaaact 234
Query: 373 ac 374
||
Sbjct: 233 ac 232
>KJC_c03168
Length = 846
Score = 79.8 bits (40), Expect = 2e-14
Identities = 120/144 (83%), Gaps = 2/144 (1%)
Strand = Plus / Plus
Query: 457 acaggcattaagaagcattttagccgaaaacatggtgaaaagaaatggaaatgtgacaaa 516
||||| || |||||||||||| || | ||||| || || ||||| |||||||| || ||
Sbjct: 119 acagggataaagaagcatttttgcaggaaacacggcgagaagaagtggaaatgcgataag 178
Query: 517 tgctccaaaaaatatgcagtgcaatctgattggaaagctca-tcaaaagacttgtggtac 575
|| || || ||||||||||| || ||||||||||||||||| || ||| | |||||| ||
Sbjct: 179 tgttcgaagaaatatgcagttcagtctgattggaaagctcactccaaa-atttgtggcac 237
Query: 576 aagagaatataaatgcgattgtgg 599
|| ||||||||||||||||||||
Sbjct: 238 tagggaatataaatgcgattgtgg 261
>KJC_c03906
Length = 556
Score = 75.8 bits (38), Expect = 3e-13
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 482 gaaaacatggtgaaaagaaatggaaatgtgacaaatgctccaaaaaatatgcagtgcaat 541
|||||||||| |||||||||||||||||||| ||||| || || | || || || ||||
Sbjct: 346 gaaaacatggagaaaagaaatggaaatgtgaaaaatgttcaaagatctacgctgttcaat 287
Query: 542 ctgattggaaagctcatcaaaagacttgtggtacaagagaatataaatgcgattgtgg 599
||||||||||||||||| || |||||||| || ||||| |||| ||| || |||||
Sbjct: 286 ctgattggaaagctcattctaaaacttgtggaactagagagtatagatgtgactgtgg 229
>KJC_c06446
Length = 815
Score = 61.9 bits (31), Expect = 4e-09
Identities = 92/111 (82%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 448 ggagatttaacaggcattaagaagcattttagccgaaaacatggtgaaaagaaatgg-aa 506
||||| |||||||| || |||||||| ||| || |||| |||||||| ||||| ||| ||
Sbjct: 340 ggagacttaacaggaatcaagaagcacttttgcagaaagcatggtgagaagaagtgggaa 281
Query: 507 atgtgacaaatgctccaaaaaatatgcagtgcaatctgattggaaagctca 557
|||||| || ||||| || | ||||| || ||||| ||||||||||||||
Sbjct: 280 atgtgataagtgctcaaagaggtatgcggttcaatcagattggaaagctca 230
>KJC_c02448
Length = 719
Score = 60.0 bits (30), Expect = 2e-08
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 280 tgtgagatatgcaacaaagggtttcagagggaccaaaacctgcaattgcataggagaggt 339
|||||||| || |||||||| ||||| || || ||||| || ||| | ||||| ||||||
Sbjct: 678 tgtgagatctgtaacaaaggatttcaaagagatcaaaatcttcaacttcatagaagaggt 619
Query: 340 cataaccttccatggaag 357
|||||||| |||||||||
Sbjct: 618 cataacctgccatggaag 601
>KJC_c04805
Length = 897
Score = 58.0 bits (29), Expect = 7e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 276 tgtgtgtgagatatgcaacaaagggtttcagagggaccaaaacctgcaattgcataggag 335
|||||||||||| |||||| |||||||||| || ||||| || || ||| ||||||||||
Sbjct: 739 tgtgtgtgagatctgcaaccaagggtttcaaagagaccagaatctacaaatgcataggag 680
Query: 336 a 336
|
Sbjct: 679 a 679
>KJC_c05392
Length = 696
Score = 56.0 bits (28), Expect = 3e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 810 agctcatatgtcagcaacagcattgttgcaaaaggcagcacaaatggg 857
||||||||||||||| || ||||| |||||||| ||||| ||||||||
Sbjct: 83 agctcatatgtcagctactgcattattgcaaaaagcagctcaaatggg 130