Jatropha Genome Database

JcCA0080591.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0080591.10 - phase: 0 
         (732 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09164                                                            599   e-171

>KJC_c09164 
          Length = 474

 Score =  599 bits (302), Expect = e-171
 Identities = 309/310 (99%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 419 aggttttggatgagtccaccttggaaatcaatgggaaacaaatcaaagtttcaagcaaaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggttttggatgagtccaccttggaaatcaatgggaaacaaatcaaagtttcaagcaaaa 60

                                                                       
Query: 479 gggacccagcagagataccttggggtgattatggggctgagtacgtggttgaatcttctg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggacccagcagagataccttggggtgattatggggctgagtacgtggttgaatcttctg 120

                                                                       
Query: 539 gggttttcaccacaattgataaggcttcagctcacaagaagggtggtgccaagaaagtgg 598
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gggttt-caccacaattgataaggcttcagctcacaagaagggtggtgccaagaaagtgg 179

                                                                       
Query: 599 tcatatcagctccctctgctgatgcaccaatgtttgtggttggggtaaatgagaagacat 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcatatcagctccctctgctgatgcaccaatgtttgtggttggggtaaatgagaagacat 239

                                                                       
Query: 659 acaagccaaacatggatgttgtttctaatgcaagctgtaccaccaattgtcttgctcctc 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acaagccaaacatggatgttgtttctaatgcaagctgtaccaccaattgtcttgctcctc 299

                     
Query: 719 ttgctaaggt 728
           ||||||||||
Sbjct: 300 ttgctaaggt 309