Jatropha Genome Database
- JcCA0080281.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0080281.10 - phase: 0 /pseudo
(509 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02456 131 2e-30
KJC_c01072 125 1e-28
KJC_c01045 100 6e-21
KJC_s14223 86 1e-16
>KJC_c02456
Length = 1198
Score = 131 bits (66), Expect = 2e-30
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 160 cttgaagagaaaaaggaaagtaaaattctaaagttcttgggctttatgtggaatcctcta 219
|||||||||||| |||| || ||| | || ||||| ||||| |||||||||||||||||
Sbjct: 123 cttgaagagaaacaggagagcaaattcctgaagtttttggggtttatgtggaatcctctt 182
Query: 220 tcatgggtcatggaagcagcagctatcatggccattgctcttgcacatggagggggcaag 279
|||||||| |||||||| || ||||| ||||| |||||||||||| ||||||| || |||
Sbjct: 183 tcatgggtgatggaagctgctgctattatggctattgctcttgcaaatggaggagggaag 242
Query: 280 agtccagactatcatgattttgttggtatagtaatcttacttgtgatcaattccaccatc 339
|||||| | || || ||||| ||||| | | || ||| ||||||| || || ||
Sbjct: 243 cctccagattggcaagactttgtgggtattattactttgcttttgatcaactctactatt 302
Query: 340 agtttcattgaggaaaacaatgctggcaatgcagctgctgcccttatggctcgg 393
|| || |||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct: 303 agctttattgaggaaaacaatgctggtaatgctgctgctgctctcatggctcgg 356
>KJC_c01072
Length = 1749
Score = 125 bits (63), Expect = 1e-28
Identities = 180/219 (82%)
Strand = Plus / Plus
Query: 196 ttgggctttatgtggaatcctctatcatgggtcatggaagcagcagctatcatggccatt 255
||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct: 168 ttgggttttatgtggaaccctctttcatgggtgatggaggcagcagctatcatggctatt 227
Query: 256 gctcttgcacatggagggggcaagagtccagactatcatgattttgttggtatagtaatc 315
|||||||| ||||||| || || || |||| || ||||||||||| || | |
Sbjct: 228 gctcttgctaatggaggaggaaaaccgcctgactggcaagattttgttggaattattact 287
Query: 316 ttacttgtgatcaattccaccatcagtttcattgaggaaaacaatgctggcaatgcagct 375
|| ||| | |||||||| || || ||||| || ||||| ||||||||||| ||||| |||
Sbjct: 288 ttgcttcttatcaattctactataagttttatagaggagaacaatgctggtaatgctgct 347
Query: 376 gctgcccttatggctcggttggctcccaaagccaaggtc 414
||||| ||||||||||| | ||||||||||||||||||
Sbjct: 348 gctgctcttatggctcgtcttgctcccaaagccaaggtc 386
>KJC_c01045
Length = 3058
Score = 99.6 bits (50), Expect = 6e-21
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 145 tttggacacaacaaacttgaagagaaaaaggaaagtaaaattctaaagttcttgggcttt 204
||||||| |||||| | |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 2763 tttggaccgaacaaattagaagagaaaaaggagagcaaaattctcaagtttttgggcttt 2704
Query: 205 atgtggaatcctctatcatgggtcatggaagcagcagctatcatggccat 254
||||||||||| | ||||||||||||||||| || ||| | ||||||||
Sbjct: 2703 atgtggaatccattgtcatgggtcatggaagctgctgctctgatggccat 2654
>KJC_s14223
Length = 550
Score = 85.7 bits (43), Expect = 1e-16
Identities = 95/111 (85%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 145 tttggacacaacaaacttgaagagaaaaaggaaagtaaaattctaaagttctt-gggctt 203
||||||| |||||| | |||||||||||||| || |||||||| ||||| || ||||||
Sbjct: 199 tttggaccgaacaaattagaagagaaaaaggagagcaaaattctcaagttttttgggctt 140
Query: 204 tatgtggaatcctctatcatgggtcatggaagcagcagctatcatggccat 254
|||||||||||| | ||||||||||||||||| || ||| | ||||||||
Sbjct: 139 tatgtggaatccattgtcatgggtcatggaagctgctgctctgatggccat 89