Jatropha Genome Database

JcCA0079711.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0079711.20 - phase: 2 /partial
         (391 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05664                                                            375   e-104

>KJC_c05664 
          Length = 646

 Score =  375 bits (189), Expect = e-104
 Identities = 200/203 (98%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  agctcttgaacaatgaggagaaagtgaagaatgtcatggaaaaa-gtattgcaggaaaag 136
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 207 agctcttgaacaatgaggagaaagtgaagaatgtcatggaaaaaagtattgcaggaaaag 148

                                                                       
Query: 137 cacagcaaaaagaatgaccagaaggatacagaaataatcagaggtttcctggaggaaaat 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cacagcaaaaagaatgaccagaaggatacagaaataatcagaggtttcctggaggaaaat 88

                                                                       
Query: 197 gggaaagaattaggtttgccaccatcagaagccaacgaagcagttatgcttctctacgat 256
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 87  gggaaagaattaggtttgccaccatcagaagccaacgaancagttatgcttctctacgat 28

                                  
Query: 257 gcagtatttgctgaagtagagtg 279
           |||||||||||| ||||||||||
Sbjct: 27  gcagtatttgctnaagtagagtg 5