Jatropha Genome Database

JcCA0078491.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0078491.20 - phase: 0 
         (666 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09371                                                            686   0.0  

>KJC_c09371 
          Length = 477

 Score =  686 bits (346), Expect = 0.0
 Identities = 367/370 (99%), Gaps = 3/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 102 cgatgagggagtccattggggaatccaaaatggcctttatctttctagaagcaccattgt 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgatgagggagtccattggggaatccaaaatggcctttatctttctagaagcaccattgt 308

                                                                       
Query: 162 gtattttaagcacaatgacatggaatctttacaaaatgtgttggagaaagtaactgcaga 221
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 307 g-attttaagcacaatgacatggaatctttacaaaatgtgttggagaaagta-ctgcaga 250

                                                                       
Query: 222 gaataagcgtgctaagaaattgcgtcgatacatcattgttgaagcagtataccagaattc 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaataagcgtgctaagaaattgcgtcgatacatcattgttgaagcagtataccagaattc 190

                                                                       
Query: 282 tggacaaatagctcctttagatgagatcatcagattgaaggagaaatatcacttccgtgt 341
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tggacaa-tagctcctttagatgagatcatcagattgaaggagaaatatcacttccgtgt 131

                                                                       
Query: 342 tttgttggaggaaagcaactcaattggcgtgcttggcagatctggaaaaggtcttactga 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tttgttggaggaaagcaactcaattggcgtgcttggcagatctggaaaaggtcttactga 71

                                                                       
Query: 402 atactacggtgttccagttgagaagatagatattataactgcggctatggggcatgcctt 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  atactacggtgttccagttgagaagatagatattataactgcggctatggggcatgcctt 11

                     
Query: 462 agccaccgaa 471
           ||||||||||
Sbjct: 10  agccaccgaa 1