Jatropha Genome Database

JcCA0076141.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0076141.10 + phase: 2 /pseudo/partial
         (1135 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06185                                                           1023   0.0  

>KJC_c06185 
          Length = 530

 Score = 1023 bits (516), Expect = 0.0
 Identities = 523/524 (99%), Gaps = 1/524 (0%)
 Strand = Plus / Minus

                                                                        
Query: 613  taaatttactgccactttaatggttgtattgaatacttttgatgctcagcccttgagtga 672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  taaatttactgccactttaatggttgtattgaatacttttgatgctcagcccttgagtga 471

                                                                        
Query: 673  ggaggaaggaaatgctaacaacttggaggaagaggcagcaacttttaacataaagtatct 732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  ggaggaaggaaatgctaacaacttggaggaagaggcagcaacttttaacataaagtatct 411

                                                                        
Query: 733  cacaagcagtaaactaatgggcttagagttaaaagatccaagttttcgtcgccacattct 792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410  cacaagcagtaaactaatgggcttagagttaaaagatccaagttttcgtcgccacattct 351

                                                                        
Query: 793  tgtccagtgcctgatacttttcgactatcttaaggctccaggaaagaatgacaaagattt 852
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  tgtccagtgcctgatacttttcgactatcttaaggctccaggaaagaatgacaaagattt 291

                                                                        
Query: 853  gacatctgaaagcatgaaagaagaaataaaaacttgtgaggagcgtgtgaagaaactact 912
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  gacatctgaaagcatgaaagaagaaataaaaacttgtgaggagcgtgtgaagaaactact 231

                                                                        
Query: 913  tgaaatgactccacctaaaggaaaggattttcttcacatggtcgagcatatactagaacg 972
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230  tgaaatgactccacctaaaggaaaggattttcttcacatggtcgagcatatactagaacg 171

                                                                        
Query: 973  tgaaaagaattgggtgtggtggaaacgtgacggttgccctgcatttgaaaaacagccaat 1032
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170  tgaaaagaattgggtgtggtggaaacgtgacggttgccctgcatttgaaaaacagccaat 111

                                                                        
Query: 1033 agagaataaaatggtccaagatggagttaa-aaaacgtaagccaaggtggagactgggga 1091
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 110  agagaataaaatggtccaagatggagttaaaaaaacgtaagccaaggtggagactgggga 51

                                                        
Query: 1092 ataaagaactctctcaattatggaagtgggcagatcagaatccg 1135
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50   ataaagaactctctcaattatggaagtgggcagatcagaatccg 7