Jatropha Genome Database

JcCA0075511.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075511.30 - phase: 0 
         (540 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04805                                                            248   1e-65

>KJC_c04805 
          Length = 897

 Score =  248 bits (125), Expect = 1e-65
 Identities = 341/413 (82%)
 Strand = Plus / Minus

                                                                       
Query: 73  aaaagaagaccagcaggaactccagatccagatgctgaagtggtttctctatcgccaaaa 132
           ||||||| ||| || || ||||||||||||||||| || || || ||| |||| ||||  
Sbjct: 822 aaaagaaaacctgctggtactccagatccagatgcagaggttgtatctttatcaccaagg 763

                                                                       
Query: 133 acactgctcgaatcggaccgttacgtatgtgagatctgtaatcaagggtttcagagagac 192
           ||| | || ||||| ||  | || || ||||||||||| || ||||||||||| ||||||
Sbjct: 762 acattactggaatcagatagatatgtgtgtgagatctgcaaccaagggtttcaaagagac 703

                                                                       
Query: 193 caaaacctacagatgcacagaaggagacataaggtcccatggaagttactaaagagagag 252
           || || ||||| ||||| || || ||||| || || |||||||| ||  |||||||||||
Sbjct: 702 cagaatctacaaatgcataggagaagacacaaagtgccatggaaattgttaaagagagag 643

                                                                       
Query: 253 agtccggtggtgaggaagagagtttttgtttgtccagagccttcttgcttgcaccatgat 312
           |  |  | ||| |  |||||||||| ||| || |||||||||  ||||||||||||||| 
Sbjct: 642 acgcaagaggtaaaaaagagagtttatgtgtgcccagagcctagttgcttgcaccatgac 583

                                                                       
Query: 313 ccatgtcatgcccttggtgatcttgtcgggataaagaagcactttagaagaaaacatagc 372
           || ||||||||  | || |||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 582 ccttgtcatgctttaggagatcttgttggtataaagaagcattttagaagaaaacatagc 523

                                                                       
Query: 373 aatcacaaacagtgggtctgtgataaatgctccaaagcttatgctgttcaatctgatttt 432
           ||||| || || ||||| ||||| |||||||| |||| ||||||||||||||||||||  
Sbjct: 522 aatcataagcaatgggtttgtgagaaatgctctaaaggttatgctgttcaatctgattac 463

                                                                
Query: 433 aaagcccatctcaaaacttgtggcaccagaggccattcttgcgattgcggccg 485
           ||||| |||||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct: 462 aaagctcatctcaagacttgtggcactagaggccattcttgcgactgtggccg 410