Jatropha Genome Database

JcCA0075421.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075421.20 - phase: 0 /pseudo
         (1914 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02999                                                            474   e-133

>KJC_c02999 
          Length = 694

 Score =  474 bits (239), Expect = e-133
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 129 ggagaaaacgaccaaagagagaattaaaaaattgagtgctgttaatcgtgaaacttcgag 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggagaaaacgaccaaagagagaattaaaaaattgagtgctgttaatcgtgaaacttcgag 635

                                                                       
Query: 189 caaagaggagaattatgaaatgggttgtgacgtagctgatagagaagaggtccttccttc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caaagaggagaattatgaaatgggttgtgacgtagctgatagagaagaggtccttccttc 575

                                                                       
Query: 249 acaagctccttctattagtggcagtggtgccagtaagagattcaagctacccagaaagca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acaagctccttctattagtggcagtggtgccagtaagagattcaagctacccagaaagca 515

                                                                      
Query: 309 attttttgataactgtaatggcgttgctcatgtttctgttccgcgcaagctacggtcag 367
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 attttttgataactgtaatggcgttgctcatgtttctgttccgcgcaagctacggtcag 456



 Score =  420 bits (212), Expect = e-117
 Identities = 212/212 (100%)
 Strand = Plus / Minus

                                                                       
Query: 367 gaaacaagtggccccaaactggtccttgaaggaaagtgctggtgggccaatcaccaagga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaaacaagtggccccaaactggtccttgaaggaaagtgctggtgggccaatcaccaagga 272

                                                                       
Query: 427 tgaggaagaagttgtggagaccttgtatgctttggcaggaatgttccctgacaatgaccc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgaggaagaagttgtggagaccttgtatgctttggcaggaatgttccctgacaatgaccc 212

                                                                       
Query: 487 tgattgtaacacaaaattggatagagcttctttagaagcaagttctttagctttgccaga 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgattgtaacacaaaattggatagagcttctttagaagcaagttctttagctttgccaga 152

                                           
Query: 547 ggctagtgagagtcacctgcccaaattggaag 578
           ||||||||||||||||||||||||||||||||
Sbjct: 151 ggctagtgagagtcacctgcccaaattggaag 120