Jatropha Genome Database

JcCA0075421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075421.10 + phase: 0 
         (300 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05526                                                            488   e-138

>KJC_c05526 
          Length = 760

 Score =  488 bits (246), Expect = e-138
 Identities = 273/278 (98%), Gaps = 3/278 (1%)
 Strand = Plus / Minus

                                                                       
Query: 23  agttccgaacacacaaggtcatctacaggcgatatgctggattatttttctcgctgtgtg 82
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 468 agttccgaacacacaaggtcatctacaggcgatatgctggataatttt-ctcgctgtgtg 410

                                                                       
Query: 83  ttgatataacggataatgaattggcatatttagagtgcatccatttatttgtggagatat 142
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 409 ttgatataacggataatgaattggcatatttagagtgcatccattaatt-gtggagatat 351

                                                                       
Query: 143 tggatcatttcttcagcaacgtgtgtgagctagatttggtatttaactttcacaaggttt 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tggatcatttcttcagcaacgtgtgtgagctagatttggtatttaactttcacaaggttt 291

                                                                       
Query: 203 atctgatactcgatgaattcattcttgctggggagctccaagaaacaagcaagaaggcga 262
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 290 atctgatactcgatgaattcattcttgctggggagctccaag-aacaagcaagaaggcga 232

                                                 
Query: 263 tcatagagagaatgggagaattggagaagctcgagtga 300
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tcatagagagaatgggagaattggagaagctcgagtga 194