Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075411.40 - phase: 2 /partial
         (180 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00293                                                            357   6e-99
KJC_c08272                                                            145   4e-35

>KJC_c00293 
          Length = 868

 Score =  357 bits (180), Expect = 6e-99
 Identities = 180/180 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttggaaggcaggtggtgaatatcccatcttttatggtgagggttgattcacaaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggttggaaggcaggtggtgaatatcccatcttttatggtgagggttgattcacaaaagca 356

                                                                       
Query: 61  cattgatttctctttgacaagtccattcggtggcggtcgcccaggaagagtgaagagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cattgatttctctttgacaagtccattcggtggcggtcgcccaggaagagtgaagagaaa 296

                                                                       
Query: 121 gaaccagagggcagctagcaagaaggcttctggtggagatggagacgaagaggatgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaaccagagggcagctagcaagaaggcttctggtggagatggagacgaagaggatgagga 236


>KJC_c08272 
          Length = 454

 Score =  145 bits (73), Expect = 4e-35
 Identities = 151/177 (85%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttggaaggcaggtggtgaatatcccatcttttatggtgagggttgattcacaaaagca 60
           |||||| || ||||| || ||||| || ||||||||||||||||||||||| || || ||
Sbjct: 289 ggttgggagacaggtagttaatattccctcttttatggtgagggttgattcgcagaaaca 230

                                                                       
Query: 61  cattgatttctctttgacaagtccattcggtggcggtcgcccaggaagagtgaagagaaa 120
           ||||||||||||  | ||||||||||||||||| |||||||| || ||||||||||||||
Sbjct: 229 cattgatttctcactcacaagtccattcggtggtggtcgccctggtagagtgaagagaaa 170

                                                                    
Query: 121 gaaccagagggcagctagcaagaaggcttctggtggagatggagacgaagaggatga 177
           ||| || ||||| || |||||||||  |||||| || ||||| || ||||| |||||
Sbjct: 169 gaatcaaagggctgccagcaagaagaattctggcggggatggtgatgaagaagatga 113