Jatropha Genome Database

JcCA0075121.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075121.10 + phase: 0 /partial
         (224 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00214                                                            444   e-125
KJC_c01899                                                            117   1e-26

>KJC_c00214 
          Length = 2417

 Score =  444 bits (224), Expect = e-125
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcttctcacattgttggataccctcgtatgggccccaagagagagcttaagtttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  atggcttctcacattgttggataccctcgtatgggccccaagagagagcttaagtttgca 139

                                                                       
Query: 61  ttggaatctttttgggatgggaagagcagcgctcaggatttggaaaaggtagcatttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttggaatctttttgggatgggaagagcagcgctcaggatttggaaaaggtagcatttgag 199

                                                                       
Query: 121 ctcagggaatctatctggaagcagatggctggtgctgggatcaaatacatccccagcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctcagggaatctatctggaagcagatggctggtgctgggatcaaatacatccccagcaat 259

                                                       
Query: 181 actttctcttactatgatcaggtgcttgacaccacagcattgct 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actttctcttactatgatcaggtgcttgacaccacagcattgct 303


>KJC_c01899 
          Length = 1128

 Score =  117 bits (59), Expect = 1e-26
 Identities = 179/219 (81%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggcttctcacattgttggataccctcgtatgggccccaagagagagcttaagtttgca 60
            ||||| || |||||||| || |||||||| ||||| ||||||||||| || |||||||||
Sbjct: 1074 atggcgtcacacattgtcggttaccctcgcatggggcccaagagagaactcaagtttgca 1015

                                                                        
Query: 61   ttggaatctttttgggatgggaagagcagcgctcaggatttggaaaaggtagcatttgag 120
            |||||||| || |||||||| || ||||| ||| |||| ||| ||||||| |||   || 
Sbjct: 1014 ttggaatccttctgggatggcaaaagcagtgctgaggaattgcaaaaggtggcagcagat 955

                                                                        
Query: 121  ctcagggaatctatctggaagcagatggctggtgctgggatcaaatacatccccagcaat 180
            || |||  ||| ||||||||||||||||||| | |||  ||||| |  || || ||||||
Sbjct: 954  cttaggtcatccatctggaagcagatggctgattctgacatcaagtttattccaagcaat 895

                                                   
Query: 181  actttctcttactatgatcaggtgcttgacaccacagca 219
            ||||| || || |||||||| ||| | ||||||||||||
Sbjct: 894  actttttcatattatgatcaagtgttggacaccacagca 856