Jatropha Genome Database

JcCA0074421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0074421.10 + phase: 1 /pseudo/partial
         (375 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04988                                                            103   3e-22

>KJC_c04988 
          Length = 612

 Score =  103 bits (52), Expect = 3e-22
 Identities = 142/172 (82%)
 Strand = Plus / Minus

                                                                       
Query: 184 tggtggaatgagctgtctgaatgtggaaaaggagggctttctgttaaaccgaagaggggc 243
           |||||||||||| |||| |||||||| ||| | || ||||| || |||||||||| ||||
Sbjct: 369 tggtggaatgagttgtcagaatgtggcaaacggggtctttcagtgaaaccgaagatgggc 310

                                                                       
Query: 244 gatgcattgcttttctggagtatgaaacctgacgcctctctggatccttcaagtttacat 303
            |||||||||| |||||||| |  |  ||||| ||  | || || ||||||||||| |||
Sbjct: 309 aatgcattgctgttctggagcacaaggcctgatgctacactagacccttcaagtttgcat 250

                                                               
Query: 304 ggtggttgcgctgtgattaaagggaataagtggtcagctaccaagtggatgc 355
           ||| ||||| |||| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 249 ggtagttgccctgtaattagaggaaacaagtggtcagctacaaagtggatgc 198