Jatropha Genome Database
- JcCA0073421.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0073421.10 - phase: 0 /pseudo/partial
(1992 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00182 208 4e-53
KJC_c00062 111 7e-24
KJC_s19400 94 2e-18
KJC_s18837 78 9e-14
KJC_c12958 52 5e-06
>KJC_c00182
Length = 2760
Score = 208 bits (105), Expect = 4e-53
Identities = 500/629 (79%), Gaps = 2/629 (0%)
Strand = Plus / Minus
Query: 482 taatacccaatgcaaaaggcacaacatgcaaccagagacttgaaagaatcagcggtacgg 541
||||||| |||||||||| || ||||||||||||| | |||||| |||| || || |
Sbjct: 1707 taatacctgatgcaaaaggaacttcatgcaaccagaggttggaaagagtcagtggaacag 1648
Query: 542 aacacacatatattttgcgggtgccttttagaaatgagaatggtattcttcataaatgga 601
|| |||| ||||| || | || ||||| ||| ||||| || ||||||| |||||||
Sbjct: 1647 aatacacgcatattctgagagttcctttcagatcagagaaaggaattcttcgaaaatgga 1588
Query: 602 tttcaaggtttgatgtgtggccattcttggagacctttgcagatgatgcatcaaatgaaa 661
| ||||| |||||||||||||| | |||||| |||||| || |||| ||| |||||
Sbjct: 1587 tctcaagatttgatgtgtggccttatctggagaactttgctgaggatgtggcaagtgaaa 1528
Query: 662 ttgctgccgaattacaaggagttccagatcttattattggaaattatagtgatggaaatc 721
||| ||||| ||||| | ||||| ||| |||| || || || || |||||||| ||||
Sbjct: 1527 ttgtagccgagttacaggccgttcctgattttataatagggaactacagtgatgggaatc 1468
Query: 722 ttgttgcttctttgttgtcttataagctaggaattacgcagtgcaacattgcgcatgcat 781
||||||| ||||| ||| | ||||| | || |||| ||||| | ||| |||||||| |
Sbjct: 1467 ttgttgcatctttattggcctataaaatgggtgttacacagtgtaccatcgcgcatgcct 1408
Query: 782 tggagaaaataaagtatccggattctgatatatactggagaaaatatgacgacaagtacc 841
||||||||| ||| ||||| ||||| |||||||| |||| ||||| ||| || || || |
Sbjct: 1407 tggagaaaacaaaatatccagattcagatatatattggaaaaaatttgatgataaatatc 1348
Query: 842 attttgcaagtcagtttacagctgatcttatt-gcaatgaacaatgcagattttattatc 900
| || | |||| || || ||||| | |||| || |||||||||||||||||||| |||
Sbjct: 1347 acttctcttgtcaattcactgctga-catattagccatgaacaatgcagattttataatc 1289
Query: 901 actagtacgtaccaggagattgcaggaagcaagactaatgttggacagtatgagagccat 960
|||||||| ||||| || |||||||||| |||| || |||||| |||||||| || ||
Sbjct: 1288 actagtacttaccaagaaattgcaggaacgaagaatactgttggtcagtatgaaagtcac 1229
Query: 961 actgcttttactcttcctgggctgtatcgagttgttcatggtattgacgtttttgatccc 1020
|||||||| ||||| || || | ||||||||||||||||| ||||| || |||||||||
Sbjct: 1228 actgctttcactctccccggattatatcgagttgttcatggaattgatgtctttgatccc 1169
Query: 1021 aagtttaatatagtctctccgggagcagatatgtgcatatattttccatactccgaaagg 1080
||||| ||||| |||||||| || |||||||||| ||| || || ||||| || |||| |
Sbjct: 1168 aagttcaatattgtctctcctggggcagatatgtccatctacttcccatattctgaaaag 1109
Query: 1081 gaaagaagacttactgctttacatggttc 1109
||| ||| ||||| || ||||||||||
Sbjct: 1108 caaaaaaggcttacagccctacatggttc 1080
Score = 147 bits (74), Expect = 1e-34
Identities = 164/194 (84%)
Strand = Plus / Minus
Query: 1390 tttcgctggatagctgcccaaatgaaccgtgctcgtaatggtgagctctatcggtacatt 1449
||||| |||||| | ||||||| ||| || || ||||||||||| |||||||| |||||
Sbjct: 799 tttcgatggataacagcccaaacgaatcgagcacgtaatggtgaactctatcgttacata 740
Query: 1450 gctgatgcaaaaggtgcttttgtacagcctgctttctatgaagcttttggcctcactgtt 1509
||||| ||||||| | |||||| |||||||| || |||||||||||||| || ||||||
Sbjct: 739 gctgacacaaaaggagtttttgtgcagcctgcattttatgaagcttttgggctgactgtt 680
Query: 1510 gtggaagccatgacttctggacttcctacttttgccacttgtcacggtggtcctgctgag 1569
||||| |||||||||| ||| || || || || |||||||| || ||||||||||| |||
Sbjct: 679 gtggaggccatgacttgtggcctcccaacattcgccacttgccatggtggtcctgccgag 620
Query: 1570 atcattgagcatgg 1583
|| |||||||||||
Sbjct: 619 attattgagcatgg 606
Score = 87.7 bits (44), Expect = 1e-16
Identities = 173/216 (80%)
Strand = Plus / Minus
Query: 83 ttacaaggaatgggttttgaaagaggttggggtgacacagcagaacgggtatcagagatg 142
||||||||| |||||||||| ||||||||||| | || |||| || ||| ||||
Sbjct: 2029 ttacaaggattgggttttgagagaggttggggcaatactgcagcgcgtgtactggagaca 1970
Query: 143 gtgcatctgctcttggagatccttcaggctccggatccttcgaccttagagtcatttctt 202
||||||| |||||||| ||| | || ||||| ||||| || || ||||| | || |||
Sbjct: 1969 atgcatcttctcttggacatcttgcaagctcctgatccgtcaactttagaaaccttcctt 1910
Query: 203 gggatgattcctatggttttcaatgtcgtcattgtgtctccacatggttactttggtcaa 262
|||| || || ||||| || ||||| || ||| ||||||||||||| |||||||| |||
Sbjct: 1909 gggagaataccgatggtgtttaatgttgttattttgtctccacatggatactttgggcaa 1850
Query: 263 gcaaatgtcttaggattgccagacactggtgggcag 298
|||||||| |||| ||||| |||||||||||||||
Sbjct: 1849 gcaaatgttctaggtttgcctgacactggtgggcag 1814
Score = 61.9 bits (31), Expect = 6e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 1810 aggtatacatggaagatatattctgagaggttgctgacattagctggagtttatggcttc 1869
||||| || |||||||| |||||||||||| | ||||||| ||||| |||||| | |||
Sbjct: 469 aggtacacgtggaagatttattctgagaggctattgacattggctggggtttatagtttc 410
Query: 1870 tggaagcatgtgtctaagcttga 1892
|||||| |||| || ||||||||
Sbjct: 409 tggaagtatgtttccaagcttga 387
>KJC_c00062
Length = 1646
Score = 111 bits (56), Expect = 7e-24
Identities = 155/188 (82%)
Strand = Plus / Minus
Query: 835 aagtaccattttgcaagtcagtttacagctgatcttattgcaatgaacaatgcagatttt 894
||||||||||| || | |||||||||||||||||| |||| ||||| || |||||||
Sbjct: 1135 aagtaccatttctcatgccagtttacagctgatctttttgccatgaatcatacagatttc 1076
Query: 895 attatcactagtacgtaccaggagattgcaggaagcaagactaatgttggacagtatgag 954
|| ||||| ||||| | ||| || ||||| ||||||||| | |||||| || ||||||
Sbjct: 1075 atcatcaccagtacattccaagaaattgctggaagcaaggacactgttggtcaatatgag 1016
Query: 955 agccatactgcttttactcttcctgggctgtatcgagttgttcatggtattgacgttttt 1014
||||| || ||||| || ||||||||||| || |||| |||||||||||||| || |||
Sbjct: 1015 agccacacagctttcacccttcctgggctctacagagtcgttcatggtattgatgtgttt 956
Query: 1015 gatcccaa 1022
||||||||
Sbjct: 955 gatcccaa 948
Score = 107 bits (54), Expect = 1e-22
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 1426 aatggtgagctctatcggtacattgctgatgcaaaaggtgcttttgtacagcctgctttc 1485
||||| || ||||||||||||||| ||| |||| || | |||||| |||||||||||
Sbjct: 547 aatggggaactctatcggtacatttgtgacacaaagggagtttttgtgcagcctgcttta 488
Query: 1486 tatgaagcttttggcctcactgttgtggaagccatgacttctggacttcctacttttgcc 1545
||||||||||||||| | |||||||| || |||||||||| ||| | || |||||||||
Sbjct: 487 tatgaagcttttggcttgactgttgttgaggccatgacttgtggtttgccaacttttgcc 428
Query: 1546 acttgtcacggtggtcctgctgagatcattgagcatgg 1583
|| || | ||||| |||||||||||||||| ||||||
Sbjct: 427 acatgcaatggtggccctgctgagatcattgtgcatgg 390
>KJC_s19400
Length = 396
Score = 93.7 bits (47), Expect = 2e-18
Identities = 96/111 (86%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1474 cagcctgc-tttctatgaagcttttggcctcactgttgtggaagccatgacttctggact 1532
|||||||| ||| |||||||||||||| || ||||||||||| |||||||||| ||| ||
Sbjct: 119 cagcctgcatttttatgaagcttttgggctgactgttgtggaggccatgacttgtggcct 60
Query: 1533 tcctacttttgccacttgtcacggtggtcctgctgagatcattgagcatgg 1583
|| || || |||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 59 cccaacattcgccacttgccatggtggtcctgccgagattattgagcatgg 9
Score = 54.0 bits (27), Expect = 1e-06
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 1390 tttcgctggatagctgcccaaatgaaccgtgctcgtaatggtgagctctatcggtacatt 1449
||||| |||||| | ||||||| ||| || || ||||||||||| |||||||| |||||
Sbjct: 295 tttcgatggataacagcccaaacgaatcgagcacgtaatggtgaactctatcgttacata 236
Query: 1450 gctgatgcaaaaggtgcttttgt 1472
||||| ||||||| | ||||||
Sbjct: 235 gctgacacaaaaggagtttttgt 213
>KJC_s18837
Length = 503
Score = 77.8 bits (39), Expect = 9e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 988 cgagttgttcatggtattgacgtttttgatcccaagtttaatatagtctctccgggagca 1047
|||||||||||||| ||||| || |||||||||||||| ||||| |||||||| || |||
Sbjct: 1 cgagttgttcatggaattgatgtctttgatcccaagttcaatattgtctctcctggggca 60
Query: 1048 gatatgt 1054
|||||||
Sbjct: 61 gatatgt 67
>KJC_c12958
Length = 553
Score = 52.0 bits (26), Expect = 5e-06
Identities = 113/142 (79%)
Strand = Plus / Minus
Query: 482 taatacccaatgcaaaaggcacaacatgcaaccagagacttgaaagaatcagcggtacgg 541
||||||| |||||||||| || ||||||||||||| | |||||| |||| || || |
Sbjct: 385 taatacctgatgcaaaaggaacttcatgcaaccagaggttggaaagagtcagtggaacag 326
Query: 542 aacacacatatattttgcgggtgccttttagaaatgagaatggtattcttcataaatgga 601
|| |||| ||||| || | || ||||| ||| ||||| || ||||||| |||||||
Sbjct: 325 aatacacgcatattctgagagttcctttcagatcagagaaaggaattcttcgaaaatgga 266
Query: 602 tttcaaggtttgatgtgtggcc 623
| ||||| ||||||||||||||
Sbjct: 265 tctcaagatttgatgtgtggcc 244