Jatropha Genome Database

JcCA0073191.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0073191.10 - phase: 0 
         (1245 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06964                                                            143   1e-33

>KJC_c06964 
          Length = 561

 Score =  143 bits (72), Expect = 1e-33
 Identities = 267/332 (80%)
 Strand = Plus / Plus

                                                                       
Query: 475 gctggggtccgttacgcaatgaaaaacccagcatcatacgttcacagcaatatcgctggg 534
           |||||||| ||||| |||||| | || |||  ||| || ||||| || ||||| | ||||
Sbjct: 136 gctggggtgcgttatgcaatgcagaatccaaaatcttatgttcatagtaatattggtggg 195

                                                                       
Query: 535 tttgtaagtttactcgaggtctgcaagtcagcaaatccccagcctgcaattgtttgggcg 594
           ||||| | ||| || || || || || ||||| || || || |||| | |||||||||||
Sbjct: 196 tttgtcaatttgcttgaagtatgtaaatcagctaacccacaacctgtagttgtttgggcg 255

                                                                       
Query: 595 tcttccagttccgtctatggactcaatactaaagtacccttctcagaaaaagatcgaacg 654
           ||||| ||||| || ||||| || ||| | ||||||||||| ||||| |||||| | || 
Sbjct: 256 tcttctagttcagtttatgggcttaattcgaaagtacccttttcagagaaagataggact 315

                                                                       
Query: 655 gatcggccatccagtctatatgctgctaccaagaaggctggtgaggaaattgcacacact 714
           |||| |||  | ||| ||||||| || || ||||| || || ||||||||||| || |||
Sbjct: 316 gatcagcctgcgagtttatatgcagcaactaagaaagcaggagaggaaattgctcatact 375

                                                                       
Query: 715 tataatcatatctatggtttatcgatcactggtttgcggtttttcactgtttatggtcct 774
           ||||||||||| |||||| | || || ||||| ||  |||| || |||||||||||||| 
Sbjct: 376 tataatcatatttatggtctttcaattactgggttaaggttctttactgtttatggtcca 435

                                           
Query: 775 tggggccgaccggatatggcttatttcttttt 806
           |||||| |||| ||||||||||||||||||||
Sbjct: 436 tggggcagacctgatatggcttatttcttttt 467