Jatropha Genome Database
- JcCA0071981.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0071981.10 + phase: 0 /pseudo/partial
(750 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00296 188 1e-47
KJC_s13433 137 4e-32
KJC_s15604 94 6e-19
>KJC_c00296
Length = 1555
Score = 188 bits (95), Expect = 1e-47
Identities = 320/395 (81%)
Strand = Plus / Plus
Query: 235 accaagattaacaaaggttctgtggaaatcgttactgctgttgatctaattaagaagggt 294
|||||||||||||| ||| |||| ||||| | ||| ||||||| || || |||||||||
Sbjct: 594 accaagattaacaagggtactgtcgaaattatcactcctgttgagctgatcaagaagggt 653
Query: 295 gaaaaagtgggctcatctgagtctgctcttctggcgaagcttcagatacgaccattctct 354
|| || || || || ||||| |||||||||| || |||||| || | |||||||||
Sbjct: 654 gagaaggttggatcttctgaagctgctcttcttgcaaagcttggcatcaggccattctct 713
Query: 355 tatggtcttattgtcttctctgtttatgacaatggatcagttttcagccctgaggttctt 414
||||||||| ||||| | |||||||| |||||||| || || |||||||| ||||| ||
Sbjct: 714 tatggtcttgttgtcctgtctgtttacgacaatggctccgtcttcagcccagaggtgctg 773
Query: 415 gatctcacagaggatgatcttgtggagaggtttgttaatggtgtatcgatggtcacatcg 474
||||| || |||||||| ||||| |||| ||||| || |||||| || ||||||||||||
Sbjct: 774 gatctgactgaggatgaccttgttgagaagtttgctactggtgtctccatggtcacatcg 833
Query: 475 ctatctctgtctatatcgttcccaacacttgcagctgcaccccatatgttcttgaatgcg 534
| || || || | || | |||||| || || |||||||| |||||||| | |||||
Sbjct: 834 ttggctttggctgtctcatacccaactctggctgctgcaccatatatgttcatcaatgcc 893
Query: 535 tacaagaatgttctttctgtttcagtggcaactgaatatactttcccgcaggcagagcaa 594
||||||||||| || | |||||||| |||||||| ||||| ||||| ||||||||| ||
Sbjct: 894 tacaagaatgtcctggccgtttcagttgcaactgattataccttcccacaggcagagaaa 953
Query: 595 gttaaagaattcttggaggatccaagcaaatttgc 629
|| || || | |||||||||||||||||| |||||
Sbjct: 954 gtgaaggagtacttggaggatccaagcaagtttgc 988
>KJC_s13433
Length = 385
Score = 137 bits (69), Expect = 4e-32
Identities = 210/257 (81%)
Strand = Plus / Minus
Query: 373 tctgtttatgacaatggatcagttttcagccctgaggttcttgatctcacagaggatgat 432
|||||||| |||||||| || || |||||||| ||||| || ||||| || ||||||||
Sbjct: 380 tctgtttacgacaatggctccgtcttcagcccagaggtgctggatctgactgaggatgac 321
Query: 433 cttgtggagaggtttgttaatggtgtatcgatggtcacatcgctatctctgtctatatcg 492
||||| |||| ||||| || |||||| || |||||||||||| | || || || | ||
Sbjct: 320 cttgttgagaagtttgctactggtgtctctatggtcacatcgttggctttggctgtctca 261
Query: 493 ttcccaacacttgcagctgcaccccatatgttcttgaatgcgtacaagaatgttctttct 552
| |||||| || || |||||||| |||||||| | ||||| ||||||||||| || |
Sbjct: 260 tacccaactctggctgctgcaccatatatgttcatcaatgcctacaagaatgtcctggcc 201
Query: 553 gtttcagtggcaactgaatatactttcccgcaggcagagcaagttaaagaattcttggag 612
|||||||| |||||||| ||||| ||||| ||||||||| |||| || || | |||||||
Sbjct: 200 gtttcagttgcaactgattataccttcccacaggcagagaaagtgaaggagtacttggag 141
Query: 613 gatccaagcaaatttgc 629
||||||||||| |||||
Sbjct: 140 gatccaagcaagtttgc 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 348 attctcttatggtcttattgtcttctctgtttatgacaatgg 389
|||||||||||||||| ||||| | |||||||| ||||||||
Sbjct: 1 attctcttatggtcttgttgtcctgtctgtttacgacaatgg 42
>KJC_s15604
Length = 399
Score = 93.7 bits (47), Expect = 6e-19
Identities = 174/215 (80%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 235 accaagattaacaaaggttctgtggaaatcgttactgctgttgatctaattaagaagggt 294
|||||||||||||| ||| |||| ||||| | ||| ||||||| || || |||||||||
Sbjct: 177 accaagattaacaagggtactgtcgaaattatcactcctgttgagctgatcaagaagggt 236
Query: 295 gaaaaagtgggctcatctgagtctgctcttctggcgaagcttcagatacgaccattctct 354
|| || || || || ||||| |||||||||| || |||||| || | |||||||||
Sbjct: 237 gagaaggttggatcttctgaagctgctcttcttgcaaagcttggcatcaggccattctct 296
Query: 355 tatggtcttattgtcttctctgtttatgacaa-tggatcagttttcagccctgaggttct 413
||||||||| ||||| | |||||||| ||||| ||| || || |||||||| ||||| ||
Sbjct: 297 tatggtcttgttgtcctgtctgtttacgacaattggctccgtcttcagcccagaggtgct 356
Query: 414 tgatctcacagaggatgatcttgtggagaggtttg 448
||||| || |||||||| ||||| |||| |||||
Sbjct: 357 ggatctgactgaggatgaccttgttgagaagtttg 391