Jatropha Genome Database

JcCA0070741.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0070741.10 - phase: 0 
         (1494 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07963                                                             54   1e-06
KJC_c03571                                                             52   4e-06

>KJC_c07963 
          Length = 763

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1122 ttggtgtccacaagaagaagtgctgaaccactcctccattggagggtttctaacacattg 1181
            |||||||||||| ||| ||||||| | ||| || || |||||||||||| |||||||| |
Sbjct: 385  ttggtgtccacaggaacaagtgctaagccattcttcgattggagggtttttaacacatag 326

               
Query: 1182 tgg 1184
            |||
Sbjct: 325  tgg 323


>KJC_c03571 
          Length = 888

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 1006 gcaaatagcaaacatccgtttttatggattattaggcc 1043
            |||||||||| ||| || ||||||||||||||||||||
Sbjct: 838  gcaaatagcagacacccatttttatggattattaggcc 875