Jatropha Genome Database

JcCA0068161.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0068161.10 + phase: 0 /pseudo/partial
         (875 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09268                                                            624   e-179

>KJC_c09268 
          Length = 350

 Score =  624 bits (315), Expect = e-179
 Identities = 331/334 (99%), Gaps = 3/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctacaggggttgtcgctcggcgcctctcgcatggatcaacttcttcgcagtcgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19  atggctacaggggttgtcgctcggcgcctctcgcatggatcaacttcttcgcagtcgatc 78

                                                                       
Query: 61  ggttcattgcgtttt-gcgagctggagattgtattctactgcctttagagaagagagaga 119
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ggttcattgcgtttttgcgagctggagattgtattctactgcctttagagaagagagaga 138

                                                                       
Query: 120 cacttttggaccgattcaagttccttctgataagttgtggggtgcacaaactcaaagatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 cacttttggaccgattcaagttccttctgataagttgtggggtgcacaaactcaaagatc 198

                                                                       
Query: 180 attgcaaaattttgaaataggcggggagcgtgagcagatgcctgaaccgattattcgtgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attgcaaaattttgaaataggcggggagcgtgagcagatgcctgaaccgattattcgtgc 258

                                                                       
Query: 240 ttttggcattcttaagaaatgcgctgccaaggtgaacatggagtatggtcttgatccatc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttttggcattcttaagaaatgcgctgccaaggtgaacatggagtatggtcttgatccatc 318

                                             
Query: 300 cataggaaaggcaataatgcaagccgcccaagaa 333
           ||||||||  ||||||||||||||||||||||||
Sbjct: 319 cataggaa--gcaataatgcaagccgcccaagaa 350