Jatropha Genome Database

JcCA0066941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0066941.10 + phase: 0 /partial
         (567 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07975                                                            137   3e-32

>KJC_c07975 
          Length = 629

 Score =  137 bits (69), Expect = 3e-32
 Identities = 352/445 (79%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggccttgtggagctcgaaattctacagagaagcggctcctccactgagaagaagcaagct 66
           ||||| || |||||||||||||| ||  | |||||| | ||  |||||||||||||||| 
Sbjct: 444 ggcctcgtcgagctcgaaattcttcaacgtagcggcacatctgctgagaagaagcaagca 385

                                                                       
Query: 67  gctgttataataccagtggttcagaagcaacaccaacttcttgtaactctgcttctctgt 126
           |||| |||  | || |||||||| |||||||| |||||||| || ||  ||||||| |||
Sbjct: 384 gctgctattcttccggtggttcaaaagcaacatcaacttctagtgaccttgcttctttgt 325

                                                                       
Query: 127 aatgcttgtgctatggaggcccttcctatatgccttgataaaatctttcatccttttgtt 186
           ||||||   || |||||||| ||||||||||  || |||||  | ||  |||  | ||||
Sbjct: 324 aatgctgccgccatggaggctcttcctatatatctagataagcttttcaatcagtatgtt 265

                                                                       
Query: 187 gctgttctgctatctgttacttttgtccttgcttttggggaggtaattccacaagcaatt 246
           ||| |  | || |||||||| ||||| ||   |||||| ||||| ||||||||| |||| 
Sbjct: 264 gctataattctctctgttacgtttgttctattttttggagaggttattccacaatcaata 205

                                                                       
Query: 247 tgttcgagatatggactgtttgttggtgccaatttcgtttggctagtgcgtattttgatg 306
           || || ||||||||||||  ||| ||||||||||| || ||||| |||||  ||||||||
Sbjct: 204 tgctccagatatggactggctgtaggtgccaattt-gtatggcttgtgcgagttttgatg 146

                                                                       
Query: 307 atcatctgctatcccattgcttatccgatagggaagattctggatgctgcactaggacac 366
           || || |||||||| || || ||||| || ||||||||||||||    | ||| || || 
Sbjct: 145 attatttgctatccaatagcatatccaattgggaagattctggactgggtactggggcat 86

                                                                       
Query: 367 agtgatgctttgtttagacgagctcagcttaaagcacttgtctctatccatggccaagag 426
           | ||| || || ||||| || |||||| | ||||| ||||| || |||||  |||| |||
Sbjct: 85  aatgaagcattatttaggcgggctcagttaaaagctcttgtttcaatccacagccaggag 26

                                    
Query: 427 gctggcaaggggggtgaactcacac 451
           ||||||||||||||||| |||||||
Sbjct: 25  gctggcaaggggggtgagctcacac 1