Jatropha Genome Database

JcCA0066751.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0066751.30 - phase: 2 /pseudo/partial
         (170 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00025                                                            301   3e-82
KJC_c07887                                                            285   2e-77
KJC_s20700                                                            163   2e-40

>KJC_c00025 
          Length = 4221

 Score =  301 bits (152), Expect = 3e-82
 Identities = 165/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                        
Query: 4    tttttattaacataatgacaccgagcccttattgcagcccgcgctactgaatccgctgct 63
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1672 tttttattaacataatgacaccgagcccttattgcagcccgcgctactaaatccgctgct 1731

                                                                        
Query: 64   ttattttttgtaccaacaattaagaattgttttctcctgcttgctgcatcaaaaactaaa 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1732 ttattttttgtaccaacaattaagaattgttttctcctgcttgctgcatcaaaaactaaa 1791

                                                            
Query: 124  tcacaagcttctgat-aaaaacgagcagttctagtaagatttgtaata 170
            ||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 1792 tcacaagcttctgataaaaaacgagcagttctagtaagatttataata 1839


>KJC_c07887 
          Length = 593

 Score =  285 bits (144), Expect = 2e-77
 Identities = 164/168 (97%), Gaps = 2/168 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   tttttattaacataatgacaccgagcccttattgcagcccgcgctactgaatccgctgct 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 336 tttttattaacataatgacaccgagcccttattgcagcccgcgctactaaatccgctgct 277

                                                                       
Query: 64  ttattttttgtaccaacaattaagaattgttttctcctgcttgctgcatcaaaaactaaa 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttattttt-gtaccaacaattaagaattgttttctcctgcttgctgcatcaaaaactaaa 218

                                                           
Query: 124 tcacaagcttctgata-aaaacgagcagttctagtaagatttgtaata 170
           |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 217 tcacaagcttctgataaaaaacgagcagttctagtaagatttataata 170


>KJC_s20700 
          Length = 254

 Score =  163 bits (82), Expect = 2e-40
 Identities = 89/90 (98%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                       
Query: 82  attaagaattgttttctcctgcttgctgcatcaaaaactaaatcacaagcttctgat-aa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   attaagaattgttttctcctgcttgctgcatcaaaaactaaatcacaagcttctgataaa 60

                                         
Query: 141 aaacgagcagttctagtaagatttgtaata 170
           ||||||||||||||||||||||||||||||
Sbjct: 61  aaacgagcagttctagtaagatttgtaata 90