Jatropha Genome Database

JcCA0066701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0066701.10 - phase: 0 /partial
         (162 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02116                                                            321   3e-88
KJC_s18380                                                            196   1e-50

>KJC_c02116 
          Length = 919

 Score =  321 bits (162), Expect = 3e-88
 Identities = 162/162 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaacacaatggtttagctggtgggatattttcagggatgggatcaggagtgctagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 atggaacacaatggtttagctggtgggatattttcagggatgggatcaggagtgctagga 818

                                                                       
Query: 61  ctagaaatgccactacaccaagaacaaaatcctcaaaacccacatcacttgcaccaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ctagaaatgccactacaccaagaacaaaatcctcaaaacccacatcacttgcaccaccca 758

                                                     
Query: 121 caaattgtagcctatgcccatcatgaatcagatcatcacccc 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 caaattgtagcctatgcccatcatgaatcagatcatcacccc 716


>KJC_s18380 
          Length = 348

 Score =  196 bits (99), Expect = 1e-50
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  atggaacacaatggtttagctggtgggatattttcagggatgggatcaggagtgctagga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atggaacacaatggtttagctggtgggatattttcagggatgggatcaggagtgctagga 40

                                                 
Query: 61 ctagaaatgccactacaccaagaacaaaatcctcaaaac 99
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ctagaaatgccactacaccaagaacaaaatcctcaaaac 1



 Score = 50.1 bits (25), Expect = 2e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 138 ccatcatgaatcagatcatcacccc 162
           |||||||||||||||||||||||||
Sbjct: 96  ccatcatgaatcagatcatcacccc 120