Jatropha Genome Database

JcCA0066091.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0066091.20 + phase: 0 /pseudo/partial
         (206 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08746                                                            262   3e-70

>KJC_c08746 
          Length = 532

 Score =  262 bits (132), Expect = 3e-70
 Identities = 192/210 (91%), Gaps = 4/210 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctacattaggatcatctagtagaaatggagcttggcacagagcaacaacctaccgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 284 cctacattaggatcatctagtagaaatggagcttggcacagagcaacaacctgacgagga 225

                                                                       
Query: 61  aaagtaagcggcttttgtcctaaagcatgggggttgcccacatttgtgaaaataat-cta 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 224 aaagtaagcggcttttgtcctaaagcatgggggttgcccacatttgtgaaaataatcctc 165

                                                                       
Query: 120 tggaaggaaacttgaa---ctgaagctcgaagatacagctctcctctgacagcatattga 176
           |          |||||   | |||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tttccttccttttgaagctcagaagctcgaagatacagctctcctctgacagcatattga 105

                                         
Query: 177 accttcttcacattttcattcaaagattca 206
           ||||||||||||||||||||||||||||||
Sbjct: 104 accttcttcacattttcattcaaagattca 75