Jatropha Genome Database

JcCA0065831.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0065831.30 - phase: 1 /partial/short
         (98 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00135                                                            194   2e-50
KJC_c00071                                                             64   6e-11

>KJC_c00135 
          Length = 1268

 Score =  194 bits (98), Expect = 2e-50
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccagaggagattccatggggtcaaactggtgctgagtttgttgttgaatctactggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acccagaggagattccatggggtcaaactggtgctgagtttgttgttgaatctactggtg 367

                                                 
Query: 61  ttttcactgacaaggaaaaggctgcagctcacttgaag 98
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttttcactgacaaggaaaaggctgcagctcacttgaag 405


>KJC_c00071 
          Length = 1672

 Score = 63.9 bits (32), Expect = 6e-11
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 27   actggtgctgagtttgttgttgaatctactggtgttttcactgacaaggaaaaggctgca 86
            ||||| ||||||| | |||| ||||| ||||| || |||||||||||||| |||||||| 
Sbjct: 1044 actggagctgagtatattgtggaatcaactggagtgttcactgacaaggataaggctgct 985

                        
Query: 87   gctcacttgaag 98
            ||||| ||||||
Sbjct: 984  gctcatttgaag 973