Jatropha Genome Database

JcCA0065831.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0065831.20 + phase: 1 /pseudo/partial
         (227 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00135                                                            396   e-111
KJC_c00071                                                             98   1e-20

>KJC_c00135 
          Length = 1268

 Score =  396 bits (200), Expect = e-111
 Identities = 206/208 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgatggagtgaacagtggtcattagaccctcaacaatcccaaacctatcatttactacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 611 gtgatggagtgaacagtggtcattagaccctcaacaatcccaaacctatcatttataacc 552

                                                                       
Query: 61  ttggccaagggggcaagacagttagtagtgcagctagcattggaaacaatgtcaagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttggccaagggggcaagacagttagtagtgcagctagcattggaaacaatgtcaagctct 492

                                                                       
Query: 121 ggcttatattcattctcattaacacccacaacaaacataggtgcatctttgctaggagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggcttatattcattctcattaacacccacaacaaacataggtgcatctttgctaggagca 432

                                       
Query: 181 gagataacaaccttcttagcaccaccct 208
           ||||||||||||||||||||||||||||
Sbjct: 431 gagataacaaccttcttagcaccaccct 404


>KJC_c00071 
          Length = 1672

 Score = 97.6 bits (49), Expect = 1e-20
 Identities = 166/205 (80%)
 Strand = Plus / Plus

                                                                       
Query: 4   atggagtgaacagtggtcattagaccctcaacaatcccaaacctatcatttactaccttg 63
           |||||||| ||||| ||||| |||||||||||||| || || | |||||| |  ||||| 
Sbjct: 770 atggagtggacagttgtcataagaccctcaacaatgccgaagcgatcattgataaccttt 829

                                                                       
Query: 64  gccaagggggcaagacagttagtagtgcagctagcattggaaacaatgtcaagctctggc 123
           || |  || ||||| |||||||| |||||||| ||||| || ||||||| ||  ||||||
Sbjct: 830 gcaagaggagcaaggcagttagtggtgcagctggcatttgatacaatgtgaatatctggc 889

                                                                       
Query: 124 ttatattcattctcattaacacccacaacaaacataggtgcatctttgctaggagcagag 183
           || || || | |||||| ||||| ||||||||||| || ||||| ||||| || || |||
Sbjct: 890 ttgtagtcgtgctcattgacaccaacaacaaacatgggagcatccttgcttggggctgag 949

                                    
Query: 184 ataacaaccttcttagcaccaccct 208
           || |  || ||||||||||||||||
Sbjct: 950 atgatgactttcttagcaccaccct 974