Jatropha Genome Database

JcCA0062081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0062081.10 + phase: 0 
         (270 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05391                                                            188   5e-48

>KJC_c05391 
          Length = 657

 Score =  188 bits (95), Expect = 5e-48
 Identities = 170/195 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggatcgagagacaaggaccaaatgacatcacatcaccaaccgctacttagcagactt 60
           |||||||||||||||||||||||||  ||||| |||||||| |||||||||||||| || 
Sbjct: 53  atgggatcgagagacaaggaccaaactacatcgcatcaccagccgctacttagcagcctc 112

                                                                       
Query: 61  gtcgttcgccctttagtcatcgatcgtggtgatggtggtgtgggagatagtgatggtggc 120
           ||||||||||||| ||||| |||  ||||||||||||||| |||||   | | |||||||
Sbjct: 113 gtcgttcgcccttcagtcagcgacggtggtgatggtggtgggggaggccgcggtggtggc 172

                                                                       
Query: 121 aacgattatgagcccggtgaggtccatcgtgatcctcccccatactcctgccaagatcga 180
           | |||||| |||||||||||||||| ||||||||||||||| |||||  | ||||| |||
Sbjct: 173 agcgattacgagcccggtgaggtccgtcgtgatcctcccccgtactctcgtcaagaacga 232

                          
Query: 181 tattccgatgatcct 195
           |||||||| ||||||
Sbjct: 233 tattccgacgatcct 247