Jatropha Genome Database

JcCA0060621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0060621.10 + phase: 2 /partial
         (484 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01322                                                            761   0.0  

>KJC_c01322 
          Length = 1555

 Score =  761 bits (384), Expect = 0.0
 Identities = 394/396 (99%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctttcagagtacagatttgatatctcaaagttggagccattggttgcaaagcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atttctttcagagtacagatttgatatctcaaagttggagccattggttgcaaagcctca 406

                                                                       
Query: 61  ttctcctgataatcgggctttagcaagagaatgcaaagatgtcaaaatagacagagtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttctcctgataatcgggctttagcaagagaatgcaaagatgtcaaaatagacagagtgta 346

                                                                       
Query: 121 cattggatcctgtactggtggaaaaacagaggattttatggctgctgccaaagtttttct 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 345 cattggatcctgtactggtggaaaaaaagaggattttatggctgctgccaaagtttttct 286

                                                                       
Query: 181 agcttcaggtaaaaaggtcaaggttcccacgtttcttgtgcctgcaacccaaaaggtatg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agcttcaggtaaaa-ggtcaaggttcccacgtttcttgtgcctgcaacccaaaaggtatg 227

                                                                       
Query: 241 gatggatgtatatagtttaccagtaccggggtctggtggcaggacttgctcccagatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gatggatgtatatagtttaccagtaccggggtctggtggcaggacttgctcccagatttt 167

                                                                       
Query: 301 tgaagaagctggttgtgacacacctgcaagtcctagttgtggtgcatgcttgggaggccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tgaagaagctggttgtgacacacctgcaagtcctagttgtggtgcatgcttgggaggccc 107

                                               
Query: 361 caaggacacttatgcacgcatgaatgaaccaatggt 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 106 caaggacacttatgcacgcatgaatgaaccaatggt 71