Jatropha Genome Database

JcCA0060021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0060021.10 - phase: 0 
         (1521 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04580                                                             74   1e-12
KJC_c09795                                                             58   7e-08

>KJC_c04580 
          Length = 623

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 230/293 (78%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 167 ctttatggcaactctccaagaaatatggtcctgtcatgcttctccagtttggtcaagttc 226
           |||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||   || |
Sbjct: 275 ctttctggcaactttcgaagaaatatggccctgttatgcttctccaatttggtagtgtgc 334

                                                                       
Query: 227 ctgcacttattatctcctctgcagaagcagcaaaagagcttatcaaaataaatgacctca 286
           ||||  |||| || ||||| || ||||||||| |||||    | || ||  |||| ||  
Sbjct: 335 ctgctgttataatatcctcagctgaagcagcagaagaggcattaaagattcatgatcttt 394

                                                                       
Query: 287 gtagttgtagtagacctcgcttggctggtactggaagactatcttacaactatcttgata 346
            | |||| ||||||||||  || |||||| ||| |||||| || ||||| ||| | ||| 
Sbjct: 395 cttgttgcagtagacctccattagctggtgctgcaagactttcatacaattatttagatg 454

                                                                       
Query: 347 tagcttttacaccttatggagattactggagagaaataaaaaagatttgtgttattga-a 405
           |||||||| |||| ||||| |||||||||||||| || |  |  || |||||| ||||  
Sbjct: 455 tagctttttcaccatatggtgattactggagagagattaggagaatatgtgttcttgagt 514

                                                                
Query: 406 ctttttagtgctaaaagagttcaatcgtttcaatccgttagagaagaagaagt 458
           ||||||||  | ||||| || || |||||||| | ||||||||||||||||||
Sbjct: 515 ctttttagcacgaaaagggtgcagtcgtttcagttcgttagagaagaagaagt 567


>KJC_c09795 
          Length = 468

 Score = 58.0 bits (29), Expect = 7e-08
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 1237 gaagaattctttccagagagatttattgataactccattgattttagagggcaaaattat 1296
            ||||||||||| || || |||||| | |||| |||||||||||||| ||| ||||||| |
Sbjct: 293  gaagaattcttccctgaaagatttgtggatagctccattgattttaaaggacaaaatttt 234

                             
Query: 1297 gaatttttaccatttgg 1313
            || ||| | ||||||||
Sbjct: 233  gagtttctgccatttgg 217