Jatropha Genome Database

JcCA0059791.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0059791.20 + phase: 0 
         (300 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11892                                                            319   2e-87
KJC_c02950                                                             98   1e-20

>KJC_c11892 
          Length = 348

 Score =  319 bits (161), Expect = 2e-87
 Identities = 175/177 (98%), Gaps = 2/177 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggattggggaactgtgacggctgaagatctaatgggtgctttaagggaagtagattgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 172 atggattggggaactgtgacggctgaagatctaatgggtgctttaaggga-gtagattgg 230

                                                                       
Query: 61  tctactccacctcgccctctccatgaattcttctctagattcaccatccctcgatcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tctactccacctcgccctctccatgaattcttctctagattcaccatccctcgatcttat 290

                                                                    
Query: 121 cccaagtggaacagccgcttcaagtgcaatctttactactataggaccaactacttc 177
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 291 cccaagtggaacagccgcttcaagtgcaatctttac-actataggaccaactacttc 346


>KJC_c02950 
          Length = 869

 Score = 97.6 bits (49), Expect = 1e-20
 Identities = 115/137 (83%)
 Strand = Plus / Plus

                                                                       
Query: 49  gaagtagattggtctactccacctcgccctctccatgaattcttctctagattcaccatc 108
           |||||||| |||||  | |||||||||||||||  ||| ||||| || ||||||||  ||
Sbjct: 262 gaagtagactggtcatcaccacctcgccctctctctgagttcttttcaagattcactgtc 321

                                                                       
Query: 109 cctcgatcttatcccaagtggaacagccgcttcaagtgcaatctttactactataggacc 168
           ||   ||||| | |||| |||||||||||  ||||||||||||| ||||||||| |||||
Sbjct: 322 ccaaaatcttctgccaaatggaacagccgtctcaagtgcaatctgtactactatcggacc 381

                            
Query: 169 aactacttcattgtgat 185
           |||||||||||| ||||
Sbjct: 382 aactacttcattatgat 398