Jatropha Genome Database

JcCA0059601.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0059601.10 + phase: 0 /partial
         (885 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10888                                                            103   7e-22
KJC_c06975                                                             84   7e-16

>KJC_c10888 
          Length = 470

 Score =  103 bits (52), Expect = 7e-22
 Identities = 319/404 (78%), Gaps = 3/404 (0%)
 Strand = Plus / Plus

                                                                       
Query: 237 ttggcatactcaggttttccgatcaattgattccaattctgtcaaaggctttccagatga 296
           |||||||  |||| |||| || ||||| |||||||||||||| | |||||| ||| | ||
Sbjct: 66  ttggcattgtcagatttttcgttcaatagattccaattctgttagaggcttcccaaagga 125

                                                                       
Query: 297 cccaaaggatgctccaagcaggaacttgttgtgtgggaagaatgtactcatagatacgag 356
            |||   || ||| |||||| || | || | || ||||||||||| || || || | |||
Sbjct: 126 tccacgagaagctacaagcaagagcctggtatgcgggaagaatgtccttattgacatgag 185

                                                                       
Query: 357 tatacatacagcatatgtcaaggcaatccgtgctgcccaacatttcatctacattgagaa 416
            ||||||||||| || || ||||| || ||||||||||| || || || || || |||||
Sbjct: 186 catacatacagcctacgtgaaggccattcgtgctgcccagcactttat-tatatagagaa 244

                                                                       
Query: 417 tcagtacttccttggatcttcctataactgggattctaacaaagacttgggtgcaaacaa 476
            ||||| ||| |||| || || || ||||||  |||  | ||||| || ||||| || ||
Sbjct: 245 ccagtatttcattggttcctcatacaactggagttcatataaagatttaggtgctaataa 304

                                                                       
Query: 477 cctaattcccatggaaatagcacttaagattgccaacaaaatcagagcaaatgagaggtt 536
             ||||||| |||||||| ||  | ||||||||  | || ||||||||||||||||| ||
Sbjct: 305 tttaattccaatggaaattgctttgaagattgctgataagatcagagcaaatgagagatt 364

                                                                       
Query: 537 ctct-gcatatattctcatc-ccaatgtggccagaaggtgttcctacaagtgctcctacg 594
             || || || ||| ||||  |||||||||||||| |||||||| ||| ||||| |||| 
Sbjct: 365 tgctagcttacattgtcatttccaatgtggccagagggtgttccaacaggtgctgctaca 424

                                                       
Query: 595 cagaggattctattttggcagcaaaaaacaatgcaaatgatgta 638
           || |||||||||||||||||| | ||||| ||||||||||||||
Sbjct: 425 caaaggattctattttggcagaataaaaccatgcaaatgatgta 468


>KJC_c06975 
          Length = 755

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                       
Query: 14  gttgtccaagagaaccgtggcatgatttgcactccaaaattgatggtccagcagcatatg 73
           |||||||||| ||||| ||||||||| |||| |  | ||||||||| |||||||||||||
Sbjct: 443 gttgtccaagggaaccatggcatgatctgcattgtagaattgatgggccagcagcatatg 384

                                         
Query: 74  atatcctcaccaattttgaggagcgttggt 103
           || | || ||||||||||||||||| ||||
Sbjct: 383 atgttctaaccaattttgaggagcggtggt 354