Jatropha Genome Database

JcCA0046101.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0046101.20 - phase: 0 /pseudo/partial
         (185 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00711                                                            367   e-102
KJC_s15691                                                            353   9e-98

>KJC_c00711 
          Length = 1196

 Score =  367 bits (185), Expect = e-102
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgctttgcgggggcaaccttagcaggggtcgaatgctctgactgagaaaatcgaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttctgctttgcgggggcaaccttagcaggggtcgaatgctctgactgagaaaatcgaatc 295

                                                                       
Query: 61  aagacttgcatgaggacagtaacaattgcaagtgcggatgccgacaatgcaatccccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aagacttgcatgaggacagtaacaattgcaagtgcggatgccgacaatgcaatccccttc 355

                                                                       
Query: 121 cacgatgaaaaaagtgaagaccattggaggaacttccaggccccaaagataagcatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cacgatgaaaaaagtgaagaccattggaggaacttccaggccccaaagataagcatacat 415

                
Query: 181 gccca 185
           |||||
Sbjct: 416 gccca 420


>KJC_s15691 
          Length = 438

 Score =  353 bits (178), Expect = 9e-98
 Identities = 185/186 (99%), Gaps = 1/186 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgctttgcgggggcaaccttagcaggggtcgaatgctctgactgagaaaatcgaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttctgctttgcgggggcaaccttagcaggggtcgaatgctctgactgagaaaatcgaatc 255

                                                                       
Query: 61  aagacttgcatgaggacagtaacaattgcaagtgcggatgccgacaatgcaatccccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagacttgcatgaggacagtaacaattgcaagtgcggatgccgacaatgcaatccccttc 195

                                                                       
Query: 121 cacgatgaa-aaaagtgaagaccattggaggaacttccaggccccaaagataagcataca 179
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cacgatgaaaaaaagtgaagaccattggaggaacttccaggccccaaagataagcataca 135

                 
Query: 180 tgccca 185
           ||||||
Sbjct: 134 tgccca 129