Jatropha Genome Database
- JcCA0046101.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0046101.10 + phase: 0 /pseudo/partial
(1065 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00711 1265 0.0
KJC_s15691 165 3e-40
>KJC_c00711
Length = 1196
Score = 1265 bits (638), Expect = 0.0
Identities = 678/693 (97%), Gaps = 15/693 (2%)
Strand = Plus / Minus
Query: 373 ggcaaagaacatgcacttgtcatatgcaaccacagaagtgacattgattggcttgttgga 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 ggcaaagaacatgcacttgtcatatgcaaccacagaagtgacattgattggcttgttgga 1051
Query: 433 tgggttttggctcagcgatccggttgccttggcagcgcattagctgtcatgaagaaatca 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 tgggttttggctcagcgatccggttgccttggcagcgcattagctgtcatgaagaaatca 991
Query: 493 tctaaactcctgccggtaataggctggtccatgtggttttctgaatacctcttcctcgaa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tctaaactcctgccggtaataggctggtccatgtggttttctgaatacctcttcctcgaa 931
Query: 553 agaagttgggcgaaggatgaaagcactttaaagtcaggtcttcagcggctaaaagacttc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 agaagttgggcgaaggatgaaagcactttaaagtcaggtcttcagcggctaaaagacttc 871
Query: 613 cctcggcccttctggcttgctcttttcgtagaaggaactcgctttacacaggcaaagctt 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 cctcggcccttctggcttgctcttttcgtagaaggaactcgctttacacaggcaaagctt 811
Query: 673 ttagcagctcaggaatatgcagcttcagcagggttgcctattcctagaaatgttttgatt 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ttagcagctcaggaatatgcagcttcagcagggttgcctattcctagaaatgttttgatt 751
Query: 733 cctcgtactaagggatttgtttcagcagtaagcaaatatgcgctcttttgtcccagccat 792
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 750 cctcgtactaagggatttgtttcagcagtaagc-aatatgcgctcttttgtcccagccat 692
Query: 793 ttatgatgtaacagtagctatccccaaaaattcacctcaacctacaatgctcagaatgtt 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttatgatgtaacagtagctatccccaaaaattcacctcaacctacaatgctcagaatgtt 632
Query: 853 caagggccaatcctcagtgttactctcttgcaggtgcacgtacacctaaaacgtcatttg 912
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 631 caagggccaatcctcagt--------------ggtgcacgtacacctaaaacgtcatttg 586
Query: 913 atgaaggatttgcccgaattggatgaagctgtagcacaatggtgtagagatatatttgta 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atgaaggatttgcccgaattggatgaagctgtagcacaatggtgtagagatatatttgta 526
Query: 973 gccaaggatgcattactggacaagcacatagctgaggactcattcagcgaccaaccattg 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gccaaggatgcattactggacaagcacatagctgaggactcattcagcgaccaaccattg 466
Query: 1033 caggatattagccgaccaataaaatcccttgtg 1065
|||||||||||||||||||||||||||||||||
Sbjct: 465 caggatattagccgaccaataaaatcccttgtg 433
Score = 174 bits (88), Expect = 3e-43
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 158 tgtggctggagcttgtttggcttgttgattggtgggcaggaattcagatccaactttata 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 tgtggctggagcttgtttggcttgttgattggtgggcaggaattcagatccaactttata 1137
Query: 218 cggatcaggagaccttccgcttaatggg 245
||||||||||||||||||||||||||||
Sbjct: 1136 cggatcaggagaccttccgcttaatggg 1109
>KJC_s15691
Length = 438
Score = 165 bits (83), Expect = 3e-40
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 948 acaatggtgtagagatatatttgtagccaaggatgcattactggacaagcacatagctga 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 acaatggtgtagagatatatttgtagccaaggatgcattactggacaagcacatagctga 24
Query: 1008 ggactcattcagcgaccaaccat 1030
|||||||||||||||||||||||
Sbjct: 23 ggactcattcagcgaccaaccat 1
Score = 58.0 bits (29), Expect = 5e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 1026 accattgcaggatattagccgaccaat-aaaatcccttgtg 1065
||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 76 accattgtaggatattagccgaccaataaaaatcccttgtg 116