Jatropha Genome Database

JcCA0045971.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045971.20 - phase: 0 
         (1935 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09426                                                            985   0.0  

>KJC_c09426 
          Length = 532

 Score =  985 bits (497), Expect = 0.0
 Identities = 527/532 (99%), Gaps = 5/532 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1172 agggtcgttcatta-ttc--aatcatatggttaaggttgttggtatagaacc-tagggtc 1227
            |||||||||||||| |||  |||||||||||||||||||||||||||||||| |||||||
Sbjct: 531  agggtcgttcattaattcgaaatcatatggttaaggttgttggtatagaaccctagggtc 472

                                                                        
Query: 1228 gaacattatggatgcatggttgatcttctaggtcgtgctgggcttttggaagaagctgaa 1287
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 471  gaacattatggatgcatggttgatcttctaggtcgtgctgggcttttgga-gaagctgaa 413

                                                                        
Query: 1288 caacttgtcctaaacatgcctattcgaccggatgatgtaatatggaaagcattacttggt 1347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412  caacttgtcctaaacatgcctattcgaccggatgatgtaatatggaaagcattacttggt 353

                                                                        
Query: 1348 gcttgtaaaatgcatggaaacgtaaagatgggtgaacgtgttgcaaggactttgatgaag 1407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352  gcttgtaaaatgcatggaaacgtaaagatgggtgaacgtgttgcaaggactttgatgaag 293

                                                                        
Query: 1408 ttgtttccacatgacagtggatcttatgtagctctctccaatatatttgcctctagggga 1467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292  ttgtttccacatgacagtggatcttatgtagctctctccaatatatttgcctctagggga 233

                                                                        
Query: 1468 aattgggttggagttgtagaagtaaggctaaaaatgaaggaaatggatgtaaggaaagat 1527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232  aattgggttggagttgtagaagtaaggctaaaaatgaaggaaatggatgtaaggaaagat 173

                                                                        
Query: 1528 cccggttgtagttggattgagattgatggggtgattcatgaattcctagtagaagatgaa 1587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172  cccggttgtagttggattgagattgatggggtgattcatgaattcctagtagaagatgaa 113

                                                                        
Query: 1588 tcccatcctagagcaaaagaaatccgttcaatgttggaggaaatttcgaaccgaataaga 1647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112  tcccatcctagagcaaaagaaatccgttcaatgttggaggaaatttcgaaccgaataaga 53

                                                                
Query: 1648 tctgcaggttacaggccgaatattacacaagtcttgctcaatatggatgaag 1699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52   tctgcaggttacaggccgaatattacacaagtcttgctcaatatggatgaag 1