Jatropha Genome Database

JcCA0045831.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045831.30 - phase: 1 /partial
         (1313 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04937                                                            135   3e-31

>KJC_c04937 
          Length = 1240

 Score =  135 bits (68), Expect = 3e-31
 Identities = 388/492 (78%), Gaps = 2/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 297 gtcaagaaacttaaaccagatggttttcagggtcacaaggagtggctgtctgaggtcaat 356
           |||||||| |||||||| || ||||| |||||||||||||||||| || | || || |||
Sbjct: 643 gtcaagaagcttaaacctgagggtttccagggtcacaaggagtggttgacggaagttaat 584

                                                                       
Query: 357 tatctcggacaacttcatcatcccaatcttgtcaaactcgttggatactgcctagatggg 416
           ||||| || |||||||||||||| |||||||| |||||  |||| |||||| | || || 
Sbjct: 583 tatcttggccaacttcatcatccaaatcttgttaaactgattggttactgcttggagggt 524

                                                                       
Query: 417 aaaaaccggcttttagtctatgaatatatgcctaaa-ggcagccttgagaatcatctgtt 475
            | ||||||||||| |||||||| |  ||||| ||| || ||| | ||||||||||||||
Sbjct: 523 gagaaccggcttttggtctatgagttcatgccaaaaagggagcttagagaatcatctgtt 464

                                                                       
Query: 476 taaaagtgaggctcaaccattgtcctgggctttaaggataaaagttgcaataggtgctgc 535
            | ||| | | | || ||||| || |||||  |  | |||||||| || || ||||||||
Sbjct: 463 cagaagagggccacagccattatcatgggcagtgcgaataaaagtggccattggtgctgc 404

                                                                       
Query: 536 tcgagggctctccttcatgcatgactctgagcagaaaattatataccgtgattttaaagc 595
             |||| ||||| ||| | |||||  |  |     || | |||||||||||||  || ||
Sbjct: 403 cagaggactctctttccttcatgatgcaaaatcccaagtcatataccgtgattc-aaggc 345

                                                                       
Query: 596 agccaatatcctattagattcggaattcaatgctaaactttcagactttggcttggcaaa 655
             | ||||| ||| ||||| | ||||||||||| |||||||| |||||||| ||||| ||
Sbjct: 344 ttctaatattctactagatgctgaattcaatgcaaaactttctgactttggtttggctaa 285

                                                                       
Query: 656 agcaggccccaccggtgatcattctcatgtttcgactcaggttctgggtactcaaggcta 715
            ||||||||||| ||||||    ||||||| || ||||| ||  ||||||| || |||||
Sbjct: 284 ggcaggccccactggtgatagaactcatgtgtccactcaagtcatgggtacacacggcta 225

                                                                       
Query: 716 tgctgctcctgaatatattgctacaggtaggctaactactaagtgtgatgtctatagctt 775
           ||| || ||||||||| |||||||||||||||| ||  | ||| ||||||| || |||||
Sbjct: 224 tgcagcgcctgaatatgttgctacaggtaggctgacagccaagagtgatgtatacagctt 165

                       
Query: 776 cggggttgtgtt 787
            || ||||||||
Sbjct: 164 tggagttgtgtt 153