Jatropha Genome Database

JcCA0045771.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045771.10 - phase: 0 /pseudo/partial
         (1419 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04580                                                             60   2e-08
KJC_c09795                                                             58   6e-08

>KJC_c04580 
          Length = 623

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                       
Query: 158 ctttatggcaactatccaagaaatatggtcctgtgatgcttctgcaatttggtcgagttc 217
           |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||| | || |
Sbjct: 275 ctttctggcaactttcgaagaaatatggccctgttatgcttctccaatttggtagtgtgc 334

                                                 
Query: 218 ctacagttattatctcctctgcagaagctgcaaaagag 255
           || | ||||| || ||||| || ||||| ||| |||||
Sbjct: 335 ctgctgttataatatcctcagctgaagcagcagaagag 372


>KJC_c09795 
          Length = 468

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                        
Query: 1107 aattcatcccaaaactcgaatccaggtcaatgtgtgggcgataggaagagaccctaaacc 1166
            ||||||||| ||||| | |||||| || ||||| ||||| || ||| |||| || ||   
Sbjct: 366  aattcatccaaaaacactaatccaagtaaatgtttgggcaatcggacgagatcccaacta 307

                                                                        
Query: 1167 ttggaaaaatcctgaagaattctttccagaaagatttatagataattccattgattttag 1226
             ||||| || || ||||||||||| || ||||||||| | ||||  ||||||||||||| 
Sbjct: 306  ctggaagaacccagaagaattcttccctgaaagatttgtggatagctccattgattttaa 247

                                                                 
Query: 1227 agggcagaattatgaattgttaccatttggaggtggcaggagaggctgtcctg 1279
            ||| || |||| ||| ||  | |||||||||| ||| || ||||| |||||||
Sbjct: 246  aggacaaaattttgagtttctgccatttggagctggtagaagaggttgtcctg 194