Jatropha Genome Database

JcCA0045351.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045351.20 - phase: 1 /TE
         (4506 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12872                                                             54   3e-06
KJC_c07611                                                             54   3e-06

>KJC_c12872 
          Length = 692

 Score = 54.0 bits (27), Expect = 3e-06
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 4299 catgaacgaacaaaacacatcgagatagattgtca 4333
            ||||||||||||||||| |||||||| ||||||||
Sbjct: 367  catgaacgaacaaaacatatcgagattgattgtca 401


>KJC_c07611 
          Length = 674

 Score = 54.0 bits (27), Expect = 3e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                       
Query: 4480 ctccaacttgagggggagtattaagga 4506
            |||||||||||||||||||||||||||
Sbjct: 621  ctccaacttgagggggagtattaagga 647