Jatropha Genome Database
- JcCA0043771.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0043771.10 + phase: 0
(1005 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c05724 1522 0.0
KJC_c11548 58 4e-08
KJC_c08991 58 4e-08
>KJC_c05724
Length = 796
Score = 1522 bits (768), Expect = 0.0
Identities = 796/800 (99%), Gaps = 4/800 (0%)
Strand = Plus / Plus
Query: 34 cagcaaagcgagagatgtgggagttacagtttgagtgctgacgtcagcgagtcagagagt 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcaaagcgagagatgtgggagttacagtttgagtgctgacgtcagcgagtcagagagt 60
Query: 94 tgtagtagcttctcttgtcggcggtttgatggtggtgaaggtgcttccagttctataact 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtagtagcttctcttgtcggcggtttgatggtggtgaaggtgcttccagttctataact 120
Query: 154 tcgtctcctcgtccgccggggaaatctagtttctcttttcaagggccgttgatgctgccc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgtctcctcgtccgccggggaaatctagtttctcttttcaagggccgttgatgctgccc 180
Query: 214 gtcattggaggaaaggatttcatgatttgcgatgtcaagcctgagaaacgggaaacggat 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtcattggaggaaaggatttcatgatttgcgatgtcaagcctgagaaacgggaaacggat 240
Query: 274 ttgtctgaagtggaaatgatgaaagagagattcgctaagcttctgttgggagaggacatg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgtctgaagtggaaatgatgaaagagagattcgctaagcttctgttgggagaggacatg 300
Query: 334 tctggaggtggtaaaggagtatgtactgctcttgctatttcaaatgctatcactaatctc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctggaggtggtaaaggagtatgtactgctcttgctatttcaaatgctatcactaatctc 360
Query: 394 tctgcaaccgtgtttggtgagctgtggaggttagagccattagccccacaaaagaagtca 453
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctg-aaccgtgttt-gtgagctgtggaggttagagccattagccccacaaaagaagtca 418
Query: 454 atgtggcgcagagagatggagtggctcttatctgtgagtgattcaattgttgagcttgtt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atgtggcgcagagagatggagtggctcttatctgtgagtgattcaattgttgagcttgtt 478
Query: 514 ccttcaatacaacaattccctggtgggggcacatatgaagtcatggtacctcgaccacgg 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccttcaatacaacaattccctggtgggggcacatatgaagtcatggtacctcgaccacgg 538
Query: 574 tcagatttatacatgaatctccctgccctgaagaaacttgatgctatgttgattagtatg 633
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 539 tcagatttatacatgaatctccctgccctgaag-aacttgatgctatgttgattagtatg 597
Query: 634 cttgatgggttttgtgacacggaattctggtatgttgatcgggggattatcttggctgat 693
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cttgatgggtttt-tgacacggaattctggtatgttgatcgggggattatcttggctgat 656
Query: 694 ggtggtgattgcgatgtgtatccatcaagcattgcaagtgcaaggccttcaattaggcag 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggtggtgattgcgatgtgtatccatcaagcattgcaagtgcaaggccttcaattaggcag 716
Query: 754 gaagagaagtggtggttgccatgcccaagagtaccatcgaatggattgtcagaggatgca 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaagagaagtggtggttgccatgcccaagagtaccatcgaatggattgtcagaggatgca 776
Query: 814 agaaagaggttgcagcaatg 833
||||||||||||||||||||
Sbjct: 777 agaaagaggttgcagcaatg 796
>KJC_c11548
Length = 785
Score = 58.0 bits (29), Expect = 4e-08
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 415 ctgtggaggttagagccattagccccacaaaagaagtcaatgtggcgcagagagatggag 474
|||||||| || |||||||| || ||| | ||||| ||||||||| | ||||||||||||
Sbjct: 734 ctgtggagattggagccattggcaccagagaagaaatcaatgtggagaagagagatggag 675
Query: 475 tggct 479
|||||
Sbjct: 674 tggct 670
>KJC_c08991
Length = 632
Score = 58.0 bits (29), Expect = 4e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 812 caagaaagaggttgcagcaatgcagggattgcacaaaccagatattaaaggcagcaatgg 871
|||||||||| || |||||||| ||||| |||||||| || ||| | ||||| || ||||
Sbjct: 274 caagaaagagattacagcaatgtagggaatgcacaaatcaaatacttaaggctgccatgg 215
Query: 872 caattaata 880
|||||||||
Sbjct: 214 caattaata 206