Jatropha Genome Database

JcCA0043471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0043471.10 + phase: 0 
         (2586 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08403                                                            737   0.0  

>KJC_c08403 
          Length = 643

 Score =  737 bits (372), Expect = 0.0
 Identities = 379/380 (99%), Gaps = 1/380 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2175 ttcatttactgccgacacgcttgcaagactggatgtaaggtcacctgatcgattggttgg 2234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ttcatttactgccgacacgcttgcaagactggatgtaaggtcacctgatcgattggttgg 60

                                                                        
Query: 2235 agagctttattttcttgatgatacaatcacattgacacctgaggagctttcacgggcccc 2294
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   agagctt-attttcttgatgatacaatcacattgacacctgaggagctttcacgggcccc 119

                                                                        
Query: 2295 agcagaagtcttggggaggagcagtcatgggacttcatacagggcaacactggataatgg 2354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  agcagaagtcttggggaggagcagtcatgggacttcatacagggcaacactggataatgg 179

                                                                        
Query: 2355 gatgttcttgacggtaaagtggctaagagaaggggtggcaaaacagaaaaaggagtttgc 2414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  gatgttcttgacggtaaagtggctaagagaaggggtggcaaaacagaaaaaggagtttgc 239

                                                                        
Query: 2415 taaggaagctaaaaagtttgcaaacatcagacatccaaatgtggtgggtttgagaggata 2474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  taaggaagctaaaaagtttgcaaacatcagacatccaaatgtggtgggtttgagaggata 299

                                                                        
Query: 2475 ctactggggacccactcaacatgagaaactcattctgtcagattatatttcacctggaag 2534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  ctactggggacccactcaacatgagaaactcattctgtcagattatatttcacctggaag 359

                                
Query: 2535 tcttgcaagctttctttatg 2554
            ||||||||||||||||||||
Sbjct: 360  tcttgcaagctttctttatg 379