Jatropha Genome Database

JcCA0043431.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0043431.10 + phase: 0 
         (798 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05709                                                            184   2e-46

>KJC_c05709 
          Length = 732

 Score =  184 bits (93), Expect = 2e-46
 Identities = 207/245 (84%)
 Strand = Plus / Minus

                                                                       
Query: 202 caagggaagctaaagaacattataggcatacccacttcgaaaaagacccatgaacaagct 261
           ||||| ||| ||||||||||||| || ||||||||||| |||||||| ||  ||||||||
Sbjct: 401 caaggaaagttaaagaacattattggaatacccacttcaaaaaagactcaccaacaagct 342

                                                                       
Query: 262 ctctctgtgggcattcccttatctgatcttgattcttatccaattattgatcttgcaatt 321
            | ||| | || ||||| |||||||||||||||||| | || |   | |||||||| || 
Sbjct: 341 ttatctctaggtattcctttatctgatcttgattctcaccccaacgtcgatcttgccatc 282

                                                                       
Query: 322 gacggtgctgatgaggttgatcccaacctcaatttggtgaaaggtagaggtgggtctttg 381
           ||||| || |||||||| ||| || | |||||||||||||||||  ||||||||||||||
Sbjct: 281 gacggcgccgatgaggtggattccgatctcaatttggtgaaaggacgaggtgggtctttg 222

                                                                       
Query: 382 ttaagagagaaaatgattgagggtgcttgtaaaaagttcattgtgattgttgatgagtct 441
           ||||||||||||||||||||  ||||||||||||||||  | || |||||||||||||| 
Sbjct: 221 ttaagagagaaaatgattgaaagtgcttgtaaaaagtttgtagttattgttgatgagtca 162

                
Query: 442 aaatt 446
           |||||
Sbjct: 161 aaatt 157