Jatropha Genome Database
- JcCA0042771.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0042771.10 + phase: 1 /partial
(1307 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c04576 1063 0.0
KJC_c09226 74 9e-13
>KJC_c04576
Length = 557
Score = 1063 bits (536), Expect = 0.0
Identities = 550/557 (98%)
Strand = Plus / Plus
Query: 136 ggcccctagatcccattgatgatatatgtcgactgaataagagcaattcaaagacattgg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcccctagatcccattgatgatatatgtcgactgaataagagcaattcaaagacattgg 60
Query: 196 tggttctggatgacgacccaactggaactcaaactgttcatgatactgaagtattaacag 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggttctggatgacgacccaactggaactcaaactgttcatgatactgaagtattaacag 120
Query: 256 aatggagtgttgagtcactagttaaggaattcaagnnnnnnnctgtatgctttttcattt 315
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 121 aatggagtgttgagtcactagttaaggaattcaagaaaaaaactgtatgctttttcattt 180
Query: 316 tgactaactccaggtcactgagttccgagaaggccagtgaactgataaaagatatctgca 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgactaactccaggtcactgagttccgagaaggccagtgaactgataaaagatatctgca 240
Query: 376 gaaacctaagtaaagctgctaaatctgttgagaatgtagactatacggtagttttgagag 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaacctaagtaaagctgctaaatctgttgagaatgtagactatacggtagttttgagag 300
Query: 436 gtgattccacattaagaggtcactttcctgaggaagcagatgcagctatttctgtacttg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtgattccacattaagaggtcactttcctgaggaagcagatgcagctatttctgtacttg 360
Query: 496 gtgaaatggatgcatggatcatttgccccttttttcttcaaggaggccgttacactattg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgaaatggatgcatggatcatttgccccttttttcttcaaggaggccgttacactattg 420
Query: 556 aagatgtgcactatgttgcagattctgattggcttgtccctgctggagagacagagtttg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagatgtgcactatgttgcagattctgattggcttgtccctgctggagagacagagtttg 480
Query: 616 caaaagatgctgcttttggctacaagtcctccaacctgcgagagtgggtggaggagaaaa 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caaaagatgctgcttttggctacaagtcctccaacctgcgagagtgggtggaggagaaaa 540
Query: 676 ctcaaggtcgtgtccca 692
|||||||||||||||||
Sbjct: 541 ctcaaggtcgtgtccca 557
>KJC_c09226
Length = 388
Score = 73.8 bits (37), Expect = 9e-13
Identities = 53/56 (94%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 1253 actggtagaaatt-gtgcggcggatatcaacaagacctcggtacattctggcaaag 1307
||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 1 actggtagaaattagtgcggcggatatca-caagaccncggtacattctggcaaag 55