Jatropha Genome Database

JcCA0042101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0042101.10 + phase: 0 
         (1389 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07974                                                            876   0.0  

>KJC_c07974 
          Length = 465

 Score =  876 bits (442), Expect = 0.0
 Identities = 465/469 (99%), Gaps = 4/469 (0%)
 Strand = Plus / Plus

                                                                        
Query: 672  ggagctttgtcttaatccagagttgatcaagaaatggaaaaggatggtgaagagagagat 731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ggagctttgtcttaatccagagttgatcaagaaatggaaaaggatggtgaagagagagat 60

                                                                        
Query: 732  taaggaggcgatgaaaggaggacaaccttttgatccttcaacttctcttgaagtgaagtt 791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   taaggaggcgatgaaaggaggacaaccttttgatccttcaacttctcttgaagtgaagtt 120

                                                                        
Query: 792  cttgagaaatctgattgaagagtttcttgatgtgcttgatttccagatttttcctcaaaa 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  cttgagaaatctgattgaagagtttcttgatgtgcttgatttccagatttttcctcaaaa 180

                                                                        
Query: 852  aagttctattaatggcgatggacttgctagtggttttgaggaagttgatgattcagcagt 911
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181  aagttctattaatggcgatggacttgctagtgg-tttgaggaagttgatgattcagcagt 239

                                                                        
Query: 912  cttgtactgtgagaggttcatggaatttctcattgatctgttgagccaactgccaacaag 971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  cttgtactgtgagaggttcatggaatttctcattgatctgttgagccaactgccaacaag 299

                                                                        
Query: 972  gaggtacctgaggcctctcgtggctgatgtagctgttgttgcaaaatgccatttaagtgc 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  gaggtacctgaggcctctcgtggctgatgtagctgttgttgcaaaatgccatttaagtgc 359

                                                                        
Query: 1032 cctttacaaacatgaaaaagggaagctatttgcacaactggttgacttactccagttcta 1091
            |||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||
Sbjct: 360  cctttacaaacatgaaaaagg--agcta-ttgcacaactggttgacttactccagttcta 416

                                                             
Query: 1092 tgagaggtttgagatcaatgatcatagtgggacacaattgacagatgat 1140
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417  tgagaggtttgagatcaatgatcatagtgggacacaattgacagatgat 465