Jatropha Genome Database

JcCA0041501.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0041501.20 - phase: 1 /TE
         (4005 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05637                                                            101   1e-20
KJC_c01717                                                             88   2e-16

>KJC_c05637 
          Length = 676

 Score =  101 bits (51), Expect = 1e-20
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                        
Query: 3774 actaataaaacccaacttcaacgttttcttggatgtttaaactatgttatagatttttat 3833
            ||||||||| ||||| | |||||||||||||| |||||||| ||||| || |||||||||
Sbjct: 640  actaataaaccccaattacaacgttttcttggttgtttaaattatgtaattgatttttat 581

                                                               
Query: 3834 ccaaacctgaattgcatgataaaaccgttacatgataggcttaagaaaaat 3884
            |||||  | ||||||||||||||||| |||||| |||| ||| | ||||||
Sbjct: 580  ccaaatttaaattgcatgataaaaccattacataatagactttataaaaat 530


>KJC_c01717 
          Length = 3065

 Score = 87.7 bits (44), Expect = 2e-16
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                        
Query: 2642 ttagaaattaaaacaatattcttactttcaccacagataaattatatggtaatcttagga 2701
            |||||||| || ||| |||| ||||||||||| |||||||||||||||||||| ||||| 
Sbjct: 81   ttagaaataaacacagtatttttactttcacctcagataaattatatggtaatattaggc 140

                                                                    
Query: 2702 acaccattcattaacctaattacaccatattctgtacaagaagattgcattaaatt 2757
            || ||||| || || || || ||||||||||| ||  |||| ||||| ||||||||
Sbjct: 141  actccatttataaatctcatcacaccatattcagttaaagaggattgtattaaatt 196