Jatropha Genome Database
- JcCA0040611.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0040611.20 + phase: 0 /partial
(927 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c06651 301 2e-81
KJC_c07966 280 6e-75
KJC_c08962 90 1e-17
KJC_c03884 72 3e-12
KJC_c04392 58 4e-08
KJC_c12158 56 2e-07
KJC_c03357 54 6e-07
KJC_c02106 52 2e-06
KJC_c04923 50 1e-05
KJC_c02774 50 1e-05
>KJC_c06651
Length = 763
Score = 301 bits (152), Expect = 2e-81
Identities = 364/432 (84%), Gaps = 2/432 (0%)
Strand = Plus / Minus
Query: 489 caaccatggtggacttcagggtcataaagaatggcttgctgaagttaattatcttggtgc 548
|||||||| |||||||||||||||||| || |||||||||||||||| || ||| ||
Sbjct: 672 caaccatgatggacttcagggtcataaggagtggcttgctgaagttagttttctcggcaa 613
Query: 549 tcttcaccatcctcacttggttaagttaattgggtattgcattgaagatgatcaaaggct 608
|||| |||| | | |||||||| || ||||| || ||||||||||||||||| ||| |
Sbjct: 612 ccttctccattccaatttggttaaattgattggttactgcattgaagatgatcagaggtt 553
Query: 609 gcttgtttatgagttcatgcctcgaggaagcttggagaatcacctctttaggaggtctct 668
||| || |||||||| ||||| ||||||| |||||||| ||||||||||| ||||| |
Sbjct: 552 gctggtgtatgagtttatgcccagaggaagtttggagaaccacctctttagaaggtcctt 493
Query: 669 gcctcttccctggtccatcagaattaaaattgcacttggtgctgcacaaggccttgcctt 728
||||||||| ||||| || ||||| ||| ||||||||| ||||||| | || ||||||||
Sbjct: 492 gcctcttccttggtctattagaatgaaa-ttgcacttg-tgctgcaaagggtcttgcctt 435
Query: 729 tcttcatgaggaagctgaacatccagtgatataccgagattttaaaacatctaatatcct 788
|||||||| || |||||| |||||||||| || ||||||||||||||||||||| |
Sbjct: 434 ccttcatgaagaggctgaaagatcagtgatatatcgtgattttaaaacatctaatatctt 375
Query: 789 gctagatgcagattacaatgccaagctttctgattttggccttgccaaggatggtcctga 848
|||||||||||||||||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 374 attagatgcagattacaatgccaaactctctgattttggactcgccaaagatggtcctga 315
Query: 849 aggagacaagactcatgtttctactcgtgtgatgggaacatatggttatgcagctccaga 908
| | ||||||||||| ||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 314 gagtggtaagactcatgtatctactcgtgtaatgggaacatatggctatgctgccccaga 255
Query: 909 gtatgtaatgac 920
|||||| |||||
Sbjct: 254 gtatgtgatgac 243
>KJC_c07966
Length = 586
Score = 280 bits (141), Expect = 6e-75
Identities = 301/353 (85%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 493 catggtggacttcagggtcataaagaatggcttgctgaagttaattatcttggtgctctt 552
|||| ||| |||||||||||||| || ||||| |||||||| |||| ||| |||| ||||
Sbjct: 358 catgatgggcttcagggtcataa-gagtggctggctgaagtgaattttctcggtgatctt 300
Query: 553 caccatcctcacttggttaagttaattgggtattgcattgaagatgatcaaaggctgctt 612
|||||| ||||||| || | ||||| || ||||||||||||||||||||||||||
Sbjct: 299 gtgcatcctaacttggtcaaactgattggttactgcattgaagatgatcaaaggctgcta 240
Query: 613 gtttatgagttcatgcctcgaggaagcttggagaatcacctctttaggaggtctctgcct 672
|| |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 239 gtgtatgagtttatgcctcgaggaagcttggagaatcacctgtttagaagatctctgcct 180
Query: 673 cttccctggtccatcagaattaaaattgcacttggtgctgcacaaggccttgcctttctt 732
||||| |||||||| || || ||||||||||| ||||||||| |||| || |||||||||
Sbjct: 179 cttccatggtccataaggatgaaaattgcactaggtgctgcaaaaggtctggcctttctt 120
Query: 733 catgaggaagctgaacatccagtgatataccgagattttaaaacatctaatatcctgcta 792
||||| ||||| ||| || || ||||| || ||||| ||||| ||||||||||| ||
Sbjct: 119 catgaagaagcagaaaggccggtcatatatcgtgatttcaaaacttctaatatcctatta 60
Query: 793 gatgcagattacaatgccaagctttctgattttggccttgccaaggatggtcc 845
||||||||||| ||||| || ||||| |||||||| |||||||| ||||||||
Sbjct: 59 gatgcagattataatgctaaactttcggattttggacttgccaaagatggtcc 7
>KJC_c08962
Length = 505
Score = 89.7 bits (45), Expect = 1e-17
Identities = 295/375 (78%), Gaps = 5/375 (1%)
Strand = Plus / Minus
Query: 550 cttcaccatcctcacttggttaagttaattgggtattgcattgaagatgatcaaaggctg 609
|||||||||||| | | |||||| | ||||||||||| |||||||||||||| ||||||
Sbjct: 373 cttcaccatcctaatcttgttaagcttattgggtattgtattgaagatgatcagaggctg 314
Query: 610 cttgtttatgagttcatgcctcgaggaagcttggagaatcacctcttt-aggaggtctct 668
|||||||| || || ||| | |||||||| | || ||||| || ||| || ||| | |
Sbjct: 313 cttgtttacgaatttatgacacgaggaagtcttgaaaatcatcttttttagaaggacaat 254
Query: 669 gcctcttccctggtccatcagaattaaaattgcacttggtgctgcacaaggccttgcctt 728
|||||||| ||||| | ||| ||||| |||||||| || |||||| |||| | |||||
Sbjct: 253 acctcttccatggtcgaacaggattaagattgcactaggggctgcaaaaggattagcctt 194
Query: 729 tcttcatgaggaagctgaacatccagtgatataccgagattttaaaacatctaatatcct 788
||||||| | | |||| |||| || ||| |||||||||| ||||| || || |
Sbjct: 193 -cttcatggtggtccagaac---cagttatttacagagattttaagacatcaaacatttt 138
Query: 789 gctagatgcagattacaatgccaagctttctgattttggccttgccaaggatggtcctga 848
||| ||| | || || ||||| |||||||| |||||||| || || || | |||||| |
Sbjct: 137 gcttgattcggaatataatgcaaagctttcagattttggtctagcaaaagctggtccgca 78
Query: 849 aggagacaagactcatgtttctactcgtgtgatgggaacatatggttatgcagctccaga 908
||| ||||| |||||||||||||| | || | |||||||| || ||||| ||||||||
Sbjct: 77 aggtgacaaaactcatgtttctaccagggtcgtcggaacatacggctatgctgctccaga 18
Query: 909 gtatgtaatgacagg 923
||||||||||||||
Sbjct: 17 atatgtaatgacagg 3
>KJC_c03884
Length = 1054
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 611 ttgtttatgagttcatgcctcgaggaagcttggagaatca 650
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 53 ttgtgtatgagttcatgcctcgaggaagcttggagaatca 92
>KJC_c04392
Length = 763
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 95 ggtgttggtttaagttgaggtttttggggagctgcatttcttcaa 139
|||||||||| |||||||||||| | ||| |||||||||||||||
Sbjct: 318 ggtgttggttcaagttgaggtttatagggggctgcatttcttcaa 274
>KJC_c12158
Length = 513
Score = 56.0 bits (28), Expect = 2e-07
Identities = 198/254 (77%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 670 cctcttccctggtccatcagaattaaaattgcacttggtgctgcacaaggccttgccttt 729
|||||||| |||| || ||||| || |||||| ||||||| || |||| |||||||||
Sbjct: 441 cctcttccatggtatattagaatgaagattgcatttggtgcggcgaaaggacttgccttt 382
Query: 730 cttcatgaggaagctgaacatccagtgatataccgagattttaaaacatctaatatcctg 789
|| ||| ||||||||| | || || || || ||||||||||| || |||||||| ||
Sbjct: 381 ctccat---gaagctgaaaaacctgttatctatcgagattttaagacgtctaatattcta 325
Query: 790 ctagatgcagattacaatgccaagctttctgattttggccttgccaaggatggtcctgaa 849
|| ||| ||||| ||||| ||||| || || |||||||| || || ||||| ||
Sbjct: 324 cttgatatggattataatgcaaagctctccgactttggcctagcaaaagatggaccgatg 265
Query: 850 ggagacaagactcatgtttctactcgtgtgatgggaacatatggttatgcagctccagag 909
|||||||| ||||||||||| || || | ||||| || || || |||||||| || ||
Sbjct: 264 ggagacaaaactcatgtttcgacacgcataatggggacttacggatatgcagcacctgaa 205
Query: 910 tatgtaatgacagg 923
||| ||||||||||
Sbjct: 204 tatataatgacagg 191
>KJC_c03357
Length = 588
Score = 54.0 bits (27), Expect = 6e-07
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 799 gattacaatgccaagctttctgattttggccttgccaaggatggtcctgaaggagacaag 858
||||||||||| |||||||| ||||||||||| || | ||||||||| ||||| ||
Sbjct: 370 gattacaatgcgaagctttcagattttggcctagcaagagatggtcctactggagataat 311
Query: 859 actcatgtttc 869
|||||||||||
Sbjct: 310 actcatgtttc 300
>KJC_c02106
Length = 1126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 778 tctaatatcctgctagatgcagattacaatgccaagctttctgattttgg 827
|||||||| ||||| ||| || | |||||||| |||||||||||||||||
Sbjct: 458 tctaatatactgcttgatacaaactacaatgcaaagctttctgattttgg 409
>KJC_c04923
Length = 951
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 805 aatgccaagctttctgattttggccttgccaag 837
||||| ||| |||||||||||||||||||||||
Sbjct: 441 aatgctaaggtttctgattttggccttgccaag 473
>KJC_c02774
Length = 1312
Score = 50.1 bits (25), Expect = 1e-05
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 808 gccaagctttctgattttggccttgccaaggatggtcctgaaggagacaagactcatgtt 867
|||||||| ||||||||||| ||||| || | ||| || |||| || ||||||| ||
Sbjct: 508 gccaagctatctgattttgggcttgcaaaagctggaccacaaggtgatgagactcacgtg 449
Query: 868 tctactcgtgtgatgggaacatatggttatgcagctccagagtatgtaatgac 920
|| ||||| || ||||| || ||||||||||| || || |||||||| |||||
Sbjct: 448 tcaactcgagtaatgggcacctatggttatgcggcccctgagtatgtgatgac 396