Jatropha Genome Database
- JcCA0040601.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0040601.10 - phase: 2 /pseudo/partial
(769 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01313 1227 0.0
KJC_c06736 174 2e-43
KJC_c06503 72 2e-12
KJC_c10034 62 2e-09
>KJC_c01313
Length = 961
Score = 1227 bits (619), Expect = 0.0
Identities = 626/627 (99%), Gaps = 1/627 (0%)
Strand = Plus / Minus
Query: 143 tcgttcaggtctgaggttcgatcagtgaagcttagacgggatagaatcattgtggtgctg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tcgttcaggtctgaggttcgatcagtgaagcttagacgggatagaatcattgtggtgctg 902
Query: 203 gagcagaaaatttttgtgtataatttcgcagatttgaaactgttgcatcagattgagaca 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gagcagaaaatttttgtgtataatttcgcagatttgaaactgttgcatcagattgagaca 842
Query: 263 attgcaaatcccaaaggactctgtgcagtgtcgcagggggcgggttcattggtaatggtt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 attgcaaatcccaaaggactctgtgcagtgtcgcagggggcgggttcattggtaatggtt 782
Query: 323 tgtccaggattgcagaagggccaagttagggtagagcattatgcgtccaaacgaactaaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgtccaggattgcagaagggccaagttagggtagagcattatgcgtccaaacgaactaaa 722
Query: 383 tttattatggctcatgattcgaggatcgcttgctttgctctcacgcaggatgggcagttg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tttattatggctcatgattcgaggatcgcttgctttgctctcacgcaggatgggcagttg 662
Query: 443 ctggcaaccgctagcacgaaaggaactctggttcggattttcaacacagctgatggcacc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctggcaaccgctagcacgaaaggaactctggttcggattttcaacacagctgatggcacc 602
Query: 503 ctgctccaagaggtaagaagaggtgcagatagagcagaaatttatagtttggctttctct 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctgctccaagaggtaagaagaggtgcagatagagcagaaatttatagtttggctttctct 542
Query: 563 tccaccgcccagtggctggcagtgtcaagcgacaagggcactgtccatgttttcagcctt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccaccgcccagtggctggcagtgtcaagcgacaagggcactgtccatgttttcagcctt 482
Query: 623 aagattaatccaggatccccagggactgataagtcaggaaacacaaccgatcccaacaat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagattaatccaggatccccagggactgataagtcaggaaacacaaccgatcccaacaat 422
Query: 683 gctgtcacatccccaacctcatctctctcgttttttaaaggtgttttgccctaagtattt 742
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 421 gctgtcacatccccaacctcatctctctcgttttttaaaggtgttttgccc-aagtattt 363
Query: 743 cagctcagagtggtcagtggctcagtt 769
|||||||||||||||||||||||||||
Sbjct: 362 cagctcagagtggtcagtggctcagtt 336
>KJC_c06736
Length = 500
Score = 174 bits (88), Expect = 2e-43
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1 cggcggcggtggtatcggagttgtcgaaatgcttttccgttgtaacattttggctctcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 cggcggcggtggtatcggagttgtcgaaatgcttttccgttgtaacattttggctctcgt 29
Query: 61 tggtggtggttccgatcctcagtatccg 88
||||||||||||||||||||||||||||
Sbjct: 28 tggtggtggttccgatcctcagtatccg 1
>KJC_c06503
Length = 531
Score = 71.9 bits (36), Expect = 2e-12
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 714 tttttaaaggtgttttgccctaagtatttcagctcagagtggtcagtggctcagtt 769
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 333 ttttgaaaggtgtattgccg-aagtatttcagctcagagtggtcagtggctcagtt 279
>KJC_c10034
Length = 463
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 739 atttcagctcagagtggtcagtggctcagtt 769
|||||||||||||||||||||||||||||||
Sbjct: 21 atttcagctcagagtggtcagtggctcagtt 51