Jatropha Genome Database

JcCA0036251.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0036251.20 - phase: 2 /TE/pseudo/partial
         (4009 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c13025                                                            498   e-140

>KJC_c13025 
          Length = 811

 Score =  498 bits (251), Expect = e-140
 Identities = 416/467 (89%), Gaps = 3/467 (0%)
 Strand = Plus / Minus

                                                                        
Query: 3213 tatttcaattaatggaagtgaactttgactatttgttttcttgttt-tcctgattgtcat 3271
            ||||||||| ||||| | |||| ||||| || ||||||||||  || |||||||||||| 
Sbjct: 465  tatttcaatcaatgggaatgaattttgattacttgttttcttacttctcctgattgtcac 406

                                                                        
Query: 3272 gttcatggcattgattataccacacgcatatttgacataaatgcattgcataattttgca 3331
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 405  gttcatggcattgattataccacacgcatatttgacataaatgcattgcatcattttgca 346

                                                                        
Query: 3332 tttaacttaagcaccatagaagatcctaaaataattgaaatcggatcagaatttaaacct 3391
            ||||||| ||||||||  |||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 345  tttaact-aagcaccaccgaagatcctaaa-taattgaaatcggatcagacttcaaacct 288

                                                                        
Query: 3392 gaacttagacaggatcttcaagaatgcatcaagagaaattcagaggtatttgcctggagc 3451
            || || ||| ||||||||||||||||||| |  |||||||| ||||||||||||||||||
Sbjct: 287  gagctcagataggatcttcaagaatgcattagaagaaattcggaggtatttgcctggagc 228

                                                                        
Query: 3452 tacgctgacatgccaggaatcgacagatcaatagcagagcacttcattcctactgatcca 3511
            || || ||||||||| | || |||||||| ||||||||||||||||| |||||||| || 
Sbjct: 227  tatgcggacatgccaaggattgacagatctatagcagagcacttcatccctactgacccg 168

                                                                        
Query: 3512 aatatgaagccagtgaagcagaagagaagacaggtcagaccagaatggcaggataagatc 3571
            ||||| ||||| ||||| ||||| || |||  ||||||||||||||||||||| ||||||
Sbjct: 167  aatatcaagccggtgaaacagaaaaggagaagggtcagaccagaatggcaggacaagatc 108

                                                                        
Query: 3572 aaggccgaggtccagaagcaattggatgcaggattcttagaagtagtacattatccggaa 3631
            || || || ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 107  aaagctgaagtccagaagcagttggatgcaggattcttagaagtagtacactatccggaa 48

                                                           
Query: 3632 tggttggccaatatagtcccggtgttgaagaaagatgggagaataag 3678
            |||||||| ||||||||||||||| | || ||||||||||| |||||
Sbjct: 47   tggttggctaatatagtcccggtgctcaaaaaagatgggaggataag 1