Jatropha Genome Database

JcCA0032471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0032471.10 - phase: 1 /partial
         (1194 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06820                                                            704   0.0  

>KJC_c06820 
          Length = 453

 Score =  704 bits (355), Expect = 0.0
 Identities = 362/363 (99%), Gaps = 1/363 (0%)
 Strand = Plus / Minus

                                                                        
Query: 745  ttcctaagcagcctactttgggatatgtgacacagatgcctctgcagactagtcctggaa 804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  ttcctaagcagcctactttgggatatgtgacacagatgcctctgcagactagtcctggaa 348

                                                                        
Query: 805  ttaggagtggaatcatgggaattggagatcaggcgcttggtggtggtttgatgcagggtg 864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347  ttaggagtggaatcatgggaattggagatcaggcgcttggtggtggtttgatgcagggtg 288

                                                                        
Query: 865  gaggtttgggaatggttggattaggaggtgtggcgacaggatcacctgcaaaccagctat 924
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287  gag-tttgggaatggttggattaggaggtgtggcgacaggatcacctgcaaaccagctat 229

                                                                        
Query: 925  cctcggatgggatcacaaagagcaacggtgatacttcttcagtatcaccagttccctatg 984
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228  cctcggatgggatcacaaagagcaacggtgatacttcttcagtatcaccagttccctatg 169

                                                                        
Query: 985  tctttaatggaggtttacgaggaagaagagcaactggtgctgtggagaaggtggttgaaa 1044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168  tctttaatggaggtttacgaggaagaagagcaactggtgctgtggagaaggtggttgaaa 109

                                                                        
Query: 1045 ggaggcagagaagaatgattaagaacagagagtcagctgcaagatcacgggctcgcaagc 1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108  ggaggcagagaagaatgattaagaacagagagtcagctgcaagatcacgggctcgcaagc 49

               
Query: 1105 agg 1107
            |||
Sbjct: 48   agg 46