Jatropha Genome Database

JcCA0029371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0029371.10 + phase: 0 /pseudo/partial
         (534 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06333                                                            291   9e-79

>KJC_c06333 
          Length = 482

 Score =  291 bits (147), Expect = 9e-79
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                       
Query: 50  cagcctgtgatactcgattaccttgctagcaagactatatgtgccgatgacttggttgtg 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cagcctgtgatactcgattaccttgctagcaagactatatgtgccgatgacttggttgtg 88

                                                                       
Query: 110 gtctctcctgatgttggtggcgtagcaagagcacgtgcttttgccaagaaattatctgat 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gtctctcctgatgttggtggcgtagcaagagcacgtgcttttgccaagaaattatctgat 28

                                      
Query: 170 gcacctctggctattgtggataaaagg 196
           |||||||||||||||||||||||||||
Sbjct: 27  gcacctctggctattgtggataaaagg 1