Jatropha Genome Database

JcCA0025111.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0025111.30 + phase: 0 
         (474 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11682                                                            650   0.0  

>KJC_c11682 
          Length = 754

 Score =  650 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcaggggacaattgaacgttttcgtaagcatgtgaaagacactcaagtaaccaaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgcaggggacaattgaacgttttcgtaagcatgtgaaagacactcaagtaaccaaaaag 351

                                                                       
Query: 61  ataactgatgaaaacatgcagcatctgaagactgaagctgcaagcatggttaagaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ataactgatgaaaacatgcagcatctgaagactgaagctgcaagcatggttaagaaaata 291

                                                                       
Query: 121 gaacaccttgaaactgctaaaaggaaattactgggtgaaggtctgggtttatgcactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaacaccttgaaactgctaaaaggaaattactgggtgaaggtctgggtttatgcactctt 231

                                                                       
Query: 181 gaagaactacagcagatagaacaacagttggggaggagtgtaagcagcattagagctaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gaagaactacagcagatagaacaacagttggggaggagtgtaagcagcattagagctaga 171

                                                                       
Query: 241 aagaatcaggttttcaaagaacagattgagcgactacaagaaaaggagagactattggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aagaatcaggttttcaaagaacagattgagcgactacaagaaaaggagagactattggca 111

                                       
Query: 301 gctgaaaatgcaagactctcggaaaagt 328
           ||||||||||||||||||||||||||||
Sbjct: 110 gctgaaaatgcaagactctcggaaaagt 83



 Score =  168 bits (85), Expect = 8e-42
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                       
Query: 359 agttaggagaacaaaacatgcccagtgaagaaagtagcccagtttcagatgtggagactg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  agttaggagaacaaaacatgcccagtgaagaaagtagcccagtttcagatgtggagactg 26

                                    
Query: 419 aacttttcattgggctaccggaaac 443
           |||||||||||||||||||||||||
Sbjct: 25  aacttttcattgggctaccggaaac 1