Jatropha Genome Database

JcCA0025111.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0025111.20 + phase: 0 
         (186 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11682                                                            331   3e-91

>KJC_c11682 
          Length = 754

 Score =  331 bits (167), Expect = 3e-91
 Identities = 181/183 (98%), Gaps = 2/183 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtgagaggaaagactcaaatgaggcgcatagagaacgccacaagcaggcaagttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atggtgagaggaaagactcaaatgaggcgcatagagaacgccacaagcaggcaagttact 534

                                                                       
Query: 61  ttctccaaacg-ccgtaatgggctgctaaagaaggcatttgagctctcagttctttgtga 119
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 533 ttctccaaacggccgtaatgggctgctaaagaaggcatttgagctctcagt-ctttgtga 475

                                                                       
Query: 120 tgctgaggttgcccttattgtcttctctccaagaggcaaactctatgaattctcaagctc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgctgaggttgcccttattgtcttctctccaagaggcaaactctatgaattctcaagctc 415

              
Query: 180 cag 182
           |||
Sbjct: 414 cag 412