Jatropha Genome Database

JcCA0021071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0021071.10 - phase: 0 /pseudo
         (1548 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04580                                                             76   3e-13
KJC_c09795                                                             54   1e-06

>KJC_c04580 
          Length = 623

 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 176 ctttctggcaactatccaagaaatatggtcctgtcatgcttctccaatttggtcgagttc 235
           ||||||||||||| || ||||||||||| ||||| |||||||||||||||||| | || |
Sbjct: 275 ctttctggcaactttcgaagaaatatggccctgttatgcttctccaatttggtagtgtgc 334

                                                 
Query: 236 ctacagttattatctcctctgcagaagctgcaaaagag 273
           || | ||||| || ||||| || ||||| ||| |||||
Sbjct: 335 ctgctgttataatatcctcagctgaagcagcagaagag 372


>KJC_c09795 
          Length = 468

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1117 aaggaaacaatgagattgcacccaccagtaccactgctacttccaagagaagccatctc 1175
            ||||||||  ||||||||||||| || |  ||| ||||||||||||||||||| |||||
Sbjct: 449  aaggaaactttgagattgcaccctcctgctccattgctacttccaagagaagctatctc 391